NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011285

3300011285: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 NT38 metaT (Metagenome Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300011285 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114292 | Gp0127488 | Ga0138373
Sample NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 NT38 metaT (Metagenome Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size29030342
Sequencing Scaffolds7
Novel Protein Genes12
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota2
Not Available3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Atlantic ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000021Metagenome / Metatranscriptome6082Y
F000048Metagenome / Metatranscriptome3365Y
F000049Metagenome / Metatranscriptome3277Y
F000798Metagenome / Metatranscriptome886Y
F003924Metatranscriptome461N
F005202Metatranscriptome408N
F059045Metagenome / Metatranscriptome134Y
F090441Metatranscriptome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0138373_102562All Organisms → cellular organisms → Eukaryota900Open in IMG/M
Ga0138373_110872Not Available812Open in IMG/M
Ga0138373_116953Not Available970Open in IMG/M
Ga0138373_119523All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda782Open in IMG/M
Ga0138373_132022Not Available688Open in IMG/M
Ga0138373_139447All Organisms → cellular organisms → Eukaryota731Open in IMG/M
Ga0138373_147432All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda832Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0138373_102562Ga0138373_1025621F005202RMMMKMMKMSNMMNDHSSSSYHSDDNDMYDMFSEMFDSSSDRMDNYRSSDYSNQMGRMSHFKNMFNNMRYKRAAGDNLDLGDRLVEKLAEQKHHMEAKIGNMTCVMKELNVLDASNNIDVQAMKRDIQKYTMPSEWFKNKYEHLLDTCYEMATNLPADIAENSVVTGDSFGTVKLGEVKMFTKCCEKAKTKLCMHQDIKKKVESNFGPMEDILQETQLTEHEFFPLVMQLLHGKEMDYMTGGM*
Ga0138373_110872Ga0138373_1108721F059045LCNLGDEIPKEDVQKMFAEICDPEDDDGMFPYMSFIDRLVGKA*
Ga0138373_113543Ga0138373_1135431F000021LKMDRYKMDPKKDPLFRGEFEVIKELCAALPDGANAKAQCDKIIDKNGPAKTGGTGIKQTRENIAESKLSYEIMDDAAQTFLKAKIMDNIQKYFYLIVFSAYVRECATIAMNAESADAPLTGGKRATPAKDLKLPKTFSQYMEEHANLRTVVEEGKGKLMWDRPIPPEALAGLEALSKDFQANLGKIIHDIYAAANGIFRDLPQGDHKKRAKYRFASKTLMCVLPAALKAEVEGLIADKKITLDLYEILGHCTWGQVKV*
Ga0138373_116953Ga0138373_1169531F090441KGEVWELATLSFLDSLALGAPITRRVIIGCQFPDAASCRKNDCDMFRSHSGTRFQRMH*
Ga0138373_119523Ga0138373_1195231F000798LLNETKNAFIGYAENSETIASDFEVAEEEIKKVKKIFNLDAANADLKKRQDIYNKTNDTITGLFNSINDNYNTMCITIPEDKKKGMSKEIKAVEDKLEVVGRFKSTVGKIEELVGALTAFDNSLKTLDAWKDAATAELKDIKEASGAMLPEDRVARTMDLQEDIAAKLEILKANAKTEQDLLPQGDKVPADAQAFKDELKRITDYVLKLQGDTKIECDKYSNDVKYWAEYRTGIKEFNPWLASAEKSAGEGLSKPTSLDE
Ga0138373_132022Ga0138373_1320221F090441KGEVWELATLSFLDSLALGALITRRVIVGCQFPDAVSYRKNDCDTFRSHSGT*
Ga0138373_134937Ga0138373_1349371F000048FLKVLEAAKAASLKMTTHAEADAEVAGLKERYDKVKGISDSWVKKLEVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEDL*
Ga0138373_135092Ga0138373_1350921F000048KAAAEGLSKPSDLNEVKALHEKVSTFDKTCLTYAKVLDAANGAAQKMTTHAEADAEVAALRERYAKVKAVSDEWVKKVDILLKEWTLLDNTVTELNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKEKEKLVENL*
Ga0138373_139447Ga0138373_1394471F003924MIALRLTLLATAAFAAPAADADADPQLLLGHGLAYAAPLVHHVVPVCKVVPKTVTVGQRCHAEPDCTTETVVVGRHITGHEEPTCTDVEHVVPAVHALGKREAEADPQLLLAAPYVAHATTKVTTKHCVPGAPILEDVTTDVTKCVPKSVCEDVTAEVLETVCGEPAAEAEAVEEA*
Ga0138373_147384Ga0138373_1473841F000021GTGAKNNADKIIDLNGTKKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKSKIMDNIHKYFYIIAFAGHMREAAVAAREVIDADKKAAVALPASGKCAIPAKDLKISKKFVDYMEENNWMRAMCETGKGNLQWERDIPPEALTNLENLAKTDFKGNLGKIIHDIYQTAHLMFNDMPQGDHKKRAKYRFASKTLMRILPEANKKEVEGLIEKGSMTLDLYEILGTCTWQKP*
Ga0138373_147432Ga0138373_1474321F000049MSFWQENYAFIKEVYEMRHLKMAEWMENVEKSIARIMADKVYTSSEFKRERDTFNSLCKDLERAEVRKWLQQILEILMAERAKDQRTTEFGKLDTLIKKHEELIPNVQKTAVMVDLYWKCYAYGDELKPHVEFLDGIMLSSTRDIAPSCLENVDELIERQEKSLSQLDAKRNIVTDLIAKGKVILQNPDKPKFLEANVKRIQDGWEDTKKKAQDRLQLLNETKNAFIGYAENSETIASDFEVAEEEIKKVKKIFNLDA
Ga0138373_158522Ga0138373_1585221F000049MAFWQENYQFIKEIYEMRHSKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFQALCKDLERTEVKKWLNQILEILMAERAKSQQETENEKLNVLIKKHEELIPSVQKTSVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLVQLDSKRNVVNDLIEKGKKILEHPDKPKFLEGNVKRIQEGWDDTKKKAQDRLKLLQDTK
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