NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011738

3300011738: Mine pit pond microbial communities from Vermont, USA - 1M



Overview

Basic Information
IMG/M Taxon OID3300011738 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118613 | Gp0137476 | Ga0120086
Sample NameMine pit pond microbial communities from Vermont, USA - 1M
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Vermont
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26682203
Sequencing Scaffolds38
Novel Protein Genes50
Associated Families50

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
Not Available11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-73
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter1
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMine Pit Pond Microbial Communities From Vermont, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomeminealkaline water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Vermont
CoordinatesLat. (o)43.727094Long. (o)-72.425964Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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