NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011933

3300011933: Human subgingival plaque microbial communities from Los Angeles, CA, USA - S03-03-R



Overview

Basic Information
IMG/M Taxon OID3300011933 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113963 | Gp0134612 | Ga0119782
Sample NameHuman subgingival plaque microbial communities from Los Angeles, CA, USA - S03-03-R
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size105136808
Sequencing Scaffolds2
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Subgingival Plaque → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049707Metagenome146N
F076191Metagenome118N
F095632Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119782_100028All Organisms → cellular organisms → Bacteria96199Open in IMG/M
Ga0119782_100402All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes20229Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119782_100028Ga0119782_10002889F076191MKIIAENPAEEALLWRIKALSDELVNQDNRCTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDNYYDNPTTYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGILRDA*
Ga0119782_100402Ga0119782_10040212F095632MSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAKNFAETIDSIKTPSNN*
Ga0119782_100402Ga0119782_10040234F049707VVSEYRSPHNDGHDPYILIWEYGTEVQRAEFVERWAEYEPDTGWTVWHFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKQKEN*
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