Sample 3300011969

3300011969: Permafrost microbial communities from Nunavut, Canada - A23_80cm_12M

Overview

Basic Information
IMG/M Taxon OID	3300011969 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118621 \| Gp0137579 \| Ga0120166
Sample Name	Permafrost microbial communities from Nunavut, Canada - A23_80cm_12M
Sequencing Status	Permanent Draft
Sequencing Center	University of Tennessee
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	84650482
Sequencing Scaffolds	36
Novel Protein Genes	39
Associated Families	38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	4
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6
Not Available	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → polar → permafrost
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	.8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002754	Metagenome / Metatranscriptome	532	Y
F002755	Metagenome / Metatranscriptome	532	Y
F003632	Metagenome / Metatranscriptome	476	Y
F003716	Metagenome / Metatranscriptome	472	Y
F004004	Metagenome / Metatranscriptome	457	Y
F007483	Metagenome / Metatranscriptome	350	Y
F008108	Metagenome / Metatranscriptome	339	Y
F008445	Metagenome / Metatranscriptome	333	Y
F008526	Metagenome / Metatranscriptome	332	Y
F008963	Metagenome / Metatranscriptome	325	Y
F010008	Metagenome / Metatranscriptome	310	Y
F010995	Metagenome	296	Y
F015236	Metagenome / Metatranscriptome	256	Y
F015801	Metagenome / Metatranscriptome	252	Y
F019034	Metagenome / Metatranscriptome	232	Y
F022919	Metagenome / Metatranscriptome	212	Y
F027360	Metagenome	195	Y
F034305	Metagenome / Metatranscriptome	175	Y
F036858	Metagenome / Metatranscriptome	169	Y
F038001	Metagenome / Metatranscriptome	167	Y
F038370	Metagenome / Metatranscriptome	166	Y
F038916	Metagenome	165	Y
F040939	Metagenome	161	Y
F044057	Metagenome / Metatranscriptome	155	Y
F051096	Metagenome	144	Y
F058404	Metagenome	135	Y
F071686	Metagenome / Metatranscriptome	122	Y
F074178	Metagenome	120	Y
F079082	Metagenome / Metatranscriptome	116	Y
F083040	Metagenome / Metatranscriptome	113	Y
F083305	Metagenome / Metatranscriptome	113	Y
F083430	Metagenome	113	Y
F086048	Metagenome / Metatranscriptome	111	Y
F087487	Metagenome / Metatranscriptome	110	Y
F088756	Metagenome	109	N
F096250	Metagenome	105	Y
F102122	Metagenome	102	N
F105770	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0120166_1000268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16134	Open in IMG/M
Ga0120166_1000270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	16034	Open in IMG/M
Ga0120166_1000713	All Organisms → cellular organisms → Bacteria	8951	Open in IMG/M
Ga0120166_1000760	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8570	Open in IMG/M
Ga0120166_1000927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7467	Open in IMG/M
Ga0120166_1001162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	6475	Open in IMG/M
Ga0120166_1001431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5655	Open in IMG/M
Ga0120166_1002015	All Organisms → cellular organisms → Bacteria	4436	Open in IMG/M
Ga0120166_1002558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3725	Open in IMG/M
Ga0120166_1002702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	3576	Open in IMG/M
Ga0120166_1002810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3491	Open in IMG/M
Ga0120166_1003213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3167	Open in IMG/M
Ga0120166_1003792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2810	Open in IMG/M
Ga0120166_1005460	Not Available	2140	Open in IMG/M
Ga0120166_1005875	Not Available	2032	Open in IMG/M
Ga0120166_1005982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1999	Open in IMG/M
Ga0120166_1006232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	1942	Open in IMG/M
Ga0120166_1006381	Not Available	1912	Open in IMG/M
Ga0120166_1007604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1672	Open in IMG/M
Ga0120166_1007972	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
Ga0120166_1008013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	1600	Open in IMG/M
Ga0120166_1008650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1506	Open in IMG/M
Ga0120166_1009482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1403	Open in IMG/M
Ga0120166_1009516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1399	Open in IMG/M
Ga0120166_1009751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1374	Open in IMG/M
Ga0120166_1010013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1346	Open in IMG/M
Ga0120166_1011238	Not Available	1226	Open in IMG/M
Ga0120166_1012837	Not Available	1098	Open in IMG/M
Ga0120166_1013449	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
Ga0120166_1016399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	907	Open in IMG/M
Ga0120166_1019439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	794	Open in IMG/M
Ga0120166_1021733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	725	Open in IMG/M
Ga0120166_1022765	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
Ga0120166_1028476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	584	Open in IMG/M
Ga0120166_1029098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
Ga0120166_1033095	Not Available	519	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120166_1000268	Ga0120166_100026814	F027360	MSETLSAELEGRVPADLVTDLVRAVLDESRQAAHDRGVEPTMREARARLERFVRARSSM*
Ga0120166_1000270	Ga0120166_10002707	F074178	MDGAQDEPRRPTGDNAVDEVLGALEAVTHEPLDIQIEVGERVQRVLQGRLDDLGKE*
Ga0120166_1000713	Ga0120166_100071311	F004004	MTKAKATATATATATATAKAIRMPGKKSPAASRSPIQRPPPAEPHPRNLTRYTKPSDSQPIRPAAEGLDHRFLRSQPRGIGPGSLRKARPRRSEYYPNMHPKTLNIRHNSNDLNYALPKHPAAR*
Ga0120166_1000760	Ga0120166_10007602	F087487	MKKMDYTLGLEAGRAGRNWTATALTDRAKERTPEPVTFGDRAEALKFLKDSQSEGYRFSGASLIDAEQRLVKNRYFVIGADGDLTLSGEDNGPRDTVWETGDVMPGRDGNTETEAVVEEILQGFAVRERFGCDLAFLLRVHRVAVGPFAMPPIPPFDPAKSLSMRSPR*
Ga0120166_1000927	Ga0120166_10009271	F040939	MGRGTVAGSGEDKVRQDPPSAGGLVNRRRVATWVAVVVAVLALARCGGDVVALGRTDAAQSFQTFRNGSFLITVTGLAYSVQEIPVDAAAKSRGVSAYKPKNGQFIVFYATATRVGFGRASMPSTSSTLLDAAGKKYPAAGPFVGAVGQGFDEDQLPGTTHSGWFLFDVPESLTMPKTLYVQSDPQPGTTNPPTLVMFG*
Ga0120166_1001162	Ga0120166_10011629	F102122	MVKAKGRNHPYLELEGEALDDHMMAMHGWSMQMVAVKGTQTLAQKYNYIGDMHRSEHP
Ga0120166_1001431	Ga0120166_10014317	F058404	MQRVWTVVLSVWAMLAIVAVLAWSHRPPASQTPQAAPQTLVVKGPNGKQQLVVVQPGALGAPHATTHTSGVPR*
Ga0120166_1002015	Ga0120166_10020153	F015801	VEIDAQPYGQASPIQLVILKTGTGGTFSYAVAPSIYTTYVARWNNTASGTVLVQVAPKLRLLVGGNGYMKAALTAPISMAGKHVSLQRLSSFGQWVNLVNLTLGTLNGRLFKPALYLPKGISHIRVFLSVNQAGNGLLSAQSGTQTVNRVK*
Ga0120166_1002558	Ga0120166_10025582	F008108	LDVRSRLLRLLRICVVAFVVAGCNGGTVDRHALTNDAATLDSIACEGALLAGDVARGRTTTYFAREQAEELRIESSNLADALSRRKALPSIERRVREKAKHAAVLAATLQRLHDHPSDRAVGAAVASTLKKLGSCA*
Ga0120166_1002558	Ga0120166_10025584	F038001	MRTLSSFLHREVVTESGRSLGRCYDLRGELSPTTLRVTGLCIGRRALLEHLGIRAQKPQAIVPWEAIVRIEGKRIIVRDDAAAP*
Ga0120166_1002702	Ga0120166_10027023	F051096	MTDHPTPTPSSATSRANEPDAVVQACVHIDAAARQLEAAANGDVFSSLLGLAGLLALIRGGINPTLRAVVDPGDRLGPIAHVDRALFLLEGAHPSIAPADLLVWTLRLADLRDALPDALLAAWAGRP*
Ga0120166_1002810	Ga0120166_10028101	F008963	MFAGIFTLLIPVWILLGLVFLLGVVALLGRIQGGRYLRPVITLISKVPIFRRGLQKASNAALERSNPELASAMKKMQRSGALRDPNRAQAAMSQLTAPERRALIQVQEEQGVMAPEATNRQMRRKLDKAKRERAAPPLGSAATRQRRR*
Ga0120166_1003213	Ga0120166_10032132	F038916	MNHMHINPSDARDVLDVLGHQNHDGDCECGDFKRNLITAIICAGPDDRARLALGFPSLVAAIKSQTSNPASIEYLEGIARSYERPLGQDR*
Ga0120166_1003792	Ga0120166_10037922	F036858	MVRLLLDRVPGQHVGLQTDEARQLYESLAFRAQPEFWSRVSGTWLDNGANR*
Ga0120166_1005460	Ga0120166_10054601	F038370	PVRPSRRGSVSCPTRRCSTGGTAVDRLRKARPRPTLDALLATVPSGGEFVVVTPVFRDYRAWRSRWTHLVWQRSLEWTALLQHDPRVRLVRHVSTDEIAVHRNYFKPLQAFVYRRLR*
Ga0120166_1005875	Ga0120166_10058752	F034305	VTAVAATQFIWVGALEESPDTEGQDAPAREAAKADGKWHRKQTAGGVFSGDAAGKGETVG
Ga0120166_1005982	Ga0120166_10059823	F003716	MRTKILLATVAAALLATGAAFAGNGPAKMAKMQYSFLGQLTATPANGGVSITVEGGTRAALRAMLGQPVTQTFAYGANTEFLKWANGVPTIVQAGDLTTGDYVRVNVRAERGSTLAAIEQQPAGLVGDHGTTLNTPDKPLYLFRGTLTSATSTGVTMHVIGGDGRAMKLLIGQSADQTFTVGGETIFLLWQGKVPTVIDASKLVVGDRIVVRIRADKGSSLAQIEATAANHVGDREPAAK
Ga0120166_1006232	Ga0120166_10062321	F003632	DKEPRGTVVELLLHEPEIVAWLEDYRPPPDAAPDDDPPAAA*
Ga0120166_1006381	Ga0120166_10063812	F002755	VTGFLLAAGSLAGSVLVRRRAARRRERVDLYGEDGSMHSYAEGSLEAERLLPIAHELLKSLT*
Ga0120166_1007604	Ga0120166_10076042	F002754	MQNDDATPVAARIETSQLDVAKLQTDANLHVQVGPATRRFHFWQQAPAWLLGFAAIGLGFLMVLRGYDSAAGWFAVSTGVILAVIGSYRAPFTIGETAISTAPGRKAPKKVTPPVG*
Ga0120166_1007972	Ga0120166_10079724	F083305	MLGQDFELEFEDGTLWLEASSGEEIWKLFSESAPPVISLVQRLDAEHAEEFHCAFVELYESYRAKDGGVRAPRRYLLVLGRRK*
Ga0120166_1008013	Ga0120166_10080133	F010995	VILYEHALLGEGIAKYLRAQIGVVATIESAHDPEAVRSALALDPAVVIFESSYTFQEFDLTTLAPHAVLIDVSWVITRGSVLSPGAAGLEQILQAVRDSRKAARLARACAVRSLAEPTR*
Ga0120166_1008650	Ga0120166_10086501	F019034	VPDRRGSRFLLEVLFLLALAVGLTLDDLSPLEIAGVMLVGWVIVAALEWAAWRSEPHYGSGLPPRYYVPRVSLPPAQPLEQVAAGYPEAARDEAPTWIAS
Ga0120166_1009482	Ga0120166_10094822	F083430	MAMISSETETGRLLRKAANLLHSVVEAAWTNDIPSPAKWDLHRIGTEAYLVQRDILDALGQGAEPTALLPGNDIAAALEQAAHTLAAIPWESNNLDTERMQARVSSLAERAQRALALRHAIRLG*
Ga0120166_1009516	Ga0120166_10095161	F079082	IYTGFAPNWAYVNDRDFPSSGPPPAPRWATGTVASRDLGLLASRIASSDDPITHHSFDTNIDLKVDATDDYLTGTSRDATSEQGTIHLERESAYSPEWPRPQAGDRLSVLGSWVWDCDHYRPEGEKTEFHPFRATWVTRHPGQPSPTSKRGEAGG*
Ga0120166_1009751	Ga0120166_10097511	F096250	MGAWLICSTICIISLAYGQLALSAYFLALSCVMPGYVAKELRRRRL*
Ga0120166_1010013	Ga0120166_10100131	F044057	MNLTIVLEGLQDDLQGLAALGDERSAQIAQRLGDALGSN
Ga0120166_1011238	Ga0120166_10112383	F015236	LAETPDLVLLGRLRDVLADKPVTETELRRLIEQADGLVRTLGANVNGSEGRLAELAEDPDSSLTEIASELHRVEELRPRLEEARSLLAELEIRARELRTSWVLRQADDPLTR*
Ga0120166_1012837	Ga0120166_10128371	F086048	ILLTASLMLAEGLKRRSASRTLERAVGQVARSPRSVAHDTRSFTDAVIDLLPQARTDVEHFDEVWR*
Ga0120166_1013449	Ga0120166_10134492	F071686	PWYVGNLAYHIPSNWDITVDYKAGKVVLKEKCFAIAPVDASVAQTRAWEKKFKLNG*
Ga0120166_1014515	Ga0120166_10145152	F008526	VWWLLAPLVVLGVVLVLFGLLVFLGRFKNGALLRPVIARLSRIGFMRRFFTSVSTKAIERQNPELARALKKINTVASNPNPQAVQKAMSRLTPAERRAYMEA
Ga0120166_1016399	Ga0120166_10163991	F008445	VASLSTAQFLVAFLAAAAAGTVVFFHAERNKIRHPSAWASFVFLFLIIGLPTYVLQVRRVRQR
Ga0120166_1019439	Ga0120166_10194391	F083040	VLIGSTAACIVVGTLVGWAAGSIRYGLAFGAVVGIPVGVATTVIKYRNI*
Ga0120166_1021733	Ga0120166_10217331	F105770	MIDSETVVGTGLRITASKNDLASRLSIVARGVSTRTAVLVLGGIQLRAEA
Ga0120166_1022765	Ga0120166_10227651	F007483	MSDPILISYVLLWATLMRALLVKARILPPTCARCGLLFERRALGERVCSCHRHGEL*
Ga0120166_1023455	Ga0120166_10234551	F088756	VVSAVCADLGWPLLESTIAYRFGRHSYTTWVGTFLPDEQSGMGCTRIALAETSYRFELGSLAAALTLTRAIAETCGPQVLAFTSGGAHVVVGADTT
Ga0120166_1028476	Ga0120166_10284761	F010008	TCVYHAYEDDQLVATGRLTLDGLPRVGEEVRLNGRPHVVRSVEFGGGEHVLQLYAA*
Ga0120166_1029098	Ga0120166_10290981	F022919	VAFFPQVVDAAEASIRYHHLDHTGHFLFGTTLGLLLGSLPAVSRRLGQRPAWGLTAVIVAPAVMMMVMVPRFYEPLERRPFEHALYHLAMAAFGLVTGLGATGLTPLGGRLTAFLSVGMALMFAAAMKGG*
Ga0120166_1033095	Ga0120166_10330951	F102122	GRNHPYLELEGEALDNHMMAMHGWSMQMVAVKGTQTLAQKYNYIGEMHRREHHLPPHVLPVDED*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011969: Permafrost microbial communities from Nunavut, Canada - A23_80cm_12M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences