NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011977

3300011977: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1111



Overview

Basic Information
IMG/M Taxon OID3300011977 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118654 | Gp0138580 | Ga0120375
Sample NameSheep rumen microbial communities from Wyoming, USA - O_aries_Con_1111
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Missouri
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size192833035
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → TM7 phylum sp. oral taxon 3521
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-781
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRuminant Gut Microbial Communities From Various Locations In Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationUSA: Wyoming
CoordinatesLat. (o)41.314168Long. (o)-105.584589Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028722Metagenome / Metatranscriptome190Y
F035626Metagenome / Metatranscriptome171Y
F041054Metagenome / Metatranscriptome160Y
F076635Metagenome / Metatranscriptome118Y
F097402Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0120375_1001739All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → TM7 phylum sp. oral taxon 35216151Open in IMG/M
Ga0120375_1001857All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales15169Open in IMG/M
Ga0120375_1006448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4357Open in IMG/M
Ga0120375_1021009All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-781266Open in IMG/M
Ga0120375_1029046All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes907Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0120375_1001739Ga0120375_10017399F028722MSTINENGQTCLELRGITERQNEIVRSDYNIEDQYGPTHKDALSDGDALGKGTGHGGHTAWLPDCSKPTNMIDYSNFDTFNGGGIYDIEGRNDIGGRKKAMASELYNNENQYGADLIKTAENVAQGQYFIGQTTKNL*
Ga0120375_1001857Ga0120375_10018575F076635MIKRGSKVRVVKMDTAGGMDWQAKRLEGKIFTVRFIDSAEQIHIEETGIALIPGVDEYSFFFSAD*
Ga0120375_1006448Ga0120375_10064489F097402MTNLDHIQSLIRHGAQLRGEDGSLTPLTKAFYHNAVEACHTGGYNAATYDLVLPGIDSELWLAIWKDGHADSGSPKSICACLAR*
Ga0120375_1021009Ga0120375_10210091F035626VLPLQGLMAPSVVNDTVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTADIRGDLILDGFEPQPSVPHCHDGHDLALPPNSAQDAAPVFASTLSSEPTAPIEDGWLDTA
Ga0120375_1029046Ga0120375_10290461F041054MANQDLLKLLYYTDKDPLSHEDLTKEQIQKEVFEKLIKITPRVGPKETANAVVAIRIVSGQANPENNQFRNVSIGIEVFTPMDQWVMKGVQLRPFAILGEIQKSLSNKTINGLGKMQGGSFTLNFLTEEMSDYEMNFDIISYD*
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