NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011979

3300011979: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1396



Overview

Basic Information
IMG/M Taxon OID3300011979 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118654 | Gp0138584 | Ga0120379
Sample NameSheep rumen microbial communities from Wyoming, USA - O_aries_Con_1396
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Missouri
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size189845674
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. E2-281
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRuminant Gut Microbial Communities From Various Locations In Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationUSA: Wyoming
CoordinatesLat. (o)41.314168Long. (o)-105.584589Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F039427Metagenome / Metatranscriptome163Y
F041506Metagenome / Metatranscriptome160Y
F061418Metagenome131Y
F067315Metagenome / Metatranscriptome125Y
F077963Metagenome117N
F081453Metagenome114N
F088010Metagenome / Metatranscriptome109Y
F097585Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0120379_1000554All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae34237Open in IMG/M
Ga0120379_1000566All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella33709Open in IMG/M
Ga0120379_1001223All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae18149Open in IMG/M
Ga0120379_1002441All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes9470Open in IMG/M
Ga0120379_1004180All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. E2-285423Open in IMG/M
Ga0120379_1004311All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.5245Open in IMG/M
Ga0120379_1011920All Organisms → cellular organisms → Bacteria2060Open in IMG/M
Ga0120379_1020253All Organisms → Viruses → Predicted Viral1353Open in IMG/M
Ga0120379_1041261Not Available779Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0120379_1000554Ga0120379_100055429F081453LLIGETISKRMTPANPVYGTNIKAPEIAVKGAPGRKCV*
Ga0120379_1000566Ga0120379_100056613F041506MCKTYTLEDNDGLMAELKSMHGKMAEMRGRLERDEITPDEWREWYAGYQARLDEIKEAVSGMREEISRRNADLERQKRERAAELNMSFEEYEDYLKSLIIS*
Ga0120379_1001223Ga0120379_10012232F081453MFPFFLLAGENIIEKHISANPVCGTNIKAPEPAVKGIPGRKFT*
Ga0120379_1002441Ga0120379_10024412F013656MKDKIYKEPNKTEEETNINVLYKDNIFSIYTNKVSLQKQLNKLLGEPTQEFKIKKSIAGSRWDIPLSDQVRISRMILKAKIFEKQENEERS*
Ga0120379_1004180Ga0120379_10041805F039427MSKKTLTFVTGIVTAVQTAAVAAVTYYVNDNAAAINSAIVIAGGAIIEICNLFVKPE*
Ga0120379_1004180Ga0120379_10041806F061418MSKRNETLQALCRDYLCKLRHMGKKHGIDVDGLIRLNRQKKCEATQHEVELLSRAVDDERLSRSEVPKILDKSYRQANEDGDFDRIKKLKHQGIYSKVSALLYKNRK*
Ga0120379_1004311Ga0120379_10043119F067315MNNLENFSNWLQIFSFLILIEDFNNTDLMKYLEHQDDLLNTIIKQNKQIIEALKGES*
Ga0120379_1011920Ga0120379_10119203F077963MKLLRKTLDFFNIHPDHNQRWTLTTLFLTGLLYTYVEPVITKAWISELPAEWLAFQSLTYSVVGLVIGMIWKGRLRRWAVRWFTVLCIIESAAGFLVGMWLCFVDSNVWVLAVACLLYGTLVSEFIGKCLMTFRPKLWNEKEREVYDNNNDVVCGIYCIVGYVCALVCMPSLQVAMFVFGLTCGLPGVR*
Ga0120379_1020253Ga0120379_10202534F097585MSEIHYIEENLPHRVSEVICINCKHRWIAVRPCKTKLKDLECPKCGKQGYVIETGEIIDNEEPF*
Ga0120379_1041261Ga0120379_10412611F088010AVMTLVCSCNGCKGKTPKIDDPVVVYHDYDGVVQDFTAGVGHIQALHRQTMYSLIQHLQDEGHTIALNGKYQWRNSLVILNDTVTMENIDDLHVVSIRDVFFYWDNQRGPQVQYITDHVKDGTQIPWPINDVWIEDKDMSDKPIKLSAEQALIRLKEWNGILPKDCNFIILRLPVGPKDCNPQWTFGDVDDVLFIDAVTGEIRDYDPAFK*
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