NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011988

3300011988: Human oral microbial communities from Los Angeles, CA, USA - S04-02-D



Overview

Basic Information
IMG/M Taxon OID3300011988 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113963 | Gp0134614 | Ga0119784
Sample NameHuman oral microbial communities from Los Angeles, CA, USA - S04-02-D
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size227536978
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium2
Not Available2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y
F046431Metagenome151Y
F084362Metagenome112N
F103430Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119784_1000127All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium59070Open in IMG/M
Ga0119784_1000762Not Available22998Open in IMG/M
Ga0119784_1002653All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium9444Open in IMG/M
Ga0119784_1004528Not Available6155Open in IMG/M
Ga0119784_1026938All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1370Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119784_1000127Ga0119784_100012791F046431MLTYTQILVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSNNFETIGLTDFNNTDEEVKVLNIYPTIEGLPMVNVTYLDGQTETIPKSGLLKVWMEGRNSK*
Ga0119784_1000762Ga0119784_100076230F103430MIEQITIKAFIGSDNKTKTLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI*
Ga0119784_1002653Ga0119784_100265319F046431MKKITKINITIILILSIIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPETTHFETIGLTDFSNNATDEEVKVLNIYPQEGITDGRLYPRETPEVVSNIFRSIPKVEVTYLDGTRETIQKSALLKVWMEGRNSKRR*
Ga0119784_1004528Ga0119784_10045286F084362MSLINCTFTVRWSDDKNKPHAKTYATEADTKRAKKWLLEHGIRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0119784_1026938Ga0119784_10269383F033081MYPPDLMVVHRPRKGAMAWLFNRVMPTDNRPTFVWPRLVVAIEDTRHFDRRELSVIAVVLIVMTIATIKALLFIPGLDSSVVELLTSIFATFLPARWATGAAWVAGVAGVLLIGDFTNYTKQQKALHSLKATRCEAYNTLLLFALWEEQAFRSGSERWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVTAAVYLAINIAKML*
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