NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012079

3300012079: Attine ant fungus gardens microbial communities from Florida, USA - TSFL002 MetaG



Overview

Basic Information
IMG/M Taxon OID3300012079 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121619 | Gp0175729 | Ga0153918
Sample NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL002 MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size202715973
Sequencing Scaffolds15
Novel Protein Genes20
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes1
All Organisms → cellular organisms → Eukaryota1
Not Available5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR651
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Grifolaceae → Grifola → Grifola frondosa1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAttine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
TypeHost-Associated
TaxonomyHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Fungus → Fungus corpus

Location Information
LocationUSA: Florida, Paynes Creek Historic State Park
CoordinatesLat. (o)27.6213Long. (o)-81.8137Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000950Metagenome822Y
F002822Metagenome527Y
F005099Metagenome / Metatranscriptome412Y
F008928Metagenome325Y
F018233Metagenome / Metatranscriptome236Y
F027793Metagenome / Metatranscriptome193Y
F031829Metagenome181Y
F032889Metagenome178Y
F033186Metagenome178Y
F048691Metagenome147Y
F050816Metagenome144Y
F054481Metagenome139Y
F058495Metagenome / Metatranscriptome135Y
F065291Metagenome127Y
F083491Metagenome112Y
F096889Metagenome / Metatranscriptome104Y
F101981Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0153918_1006118All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes3788Open in IMG/M
Ga0153918_1008177All Organisms → cellular organisms → Eukaryota3033Open in IMG/M
Ga0153918_1008568Not Available2928Open in IMG/M
Ga0153918_1015743All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales1820Open in IMG/M
Ga0153918_1017502All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales1673Open in IMG/M
Ga0153918_1034940Not Available966Open in IMG/M
Ga0153918_1042110All Organisms → cellular organisms → Bacteria → Terrabacteria group843Open in IMG/M
Ga0153918_1054367Not Available707Open in IMG/M
Ga0153918_1055709All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65696Open in IMG/M
Ga0153918_1057929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium679Open in IMG/M
Ga0153918_1064506Not Available634Open in IMG/M
Ga0153918_1069262All Organisms → cellular organisms → Bacteria606Open in IMG/M
Ga0153918_1078715All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Grifolaceae → Grifola → Grifola frondosa561Open in IMG/M
Ga0153918_1081239Not Available551Open in IMG/M
Ga0153918_1091459All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0153918_1006118Ga0153918_10061185F008928LSQKPSLPGSSKNKNQSFRAWLMKLLEEDNDDPESPPEVVNVNSTSIEKIPDPLPPSGKGKGTPKLDFPLGL*
Ga0153918_1006550Ga0153918_10065507F048691MEDQYGLTPEDYVYDMKLLLNARYGQGMLFLILLFLKQRLRHFQAIAATLMVYDFIYHIPQQVRLSICKQ*
Ga0153918_1006834Ga0153918_10068344F048691MEDQYGLIPDDYIFDLKNLSNERYIQGILFLILLFLKQRLKPFQVIVGTLMVYDFLYHIPQQVRLSICK*
Ga0153918_1008177Ga0153918_10081775F065291VSRLILNLLEANCPLDESIDSMTIESLMFHHSESNRDTEADISRGDRGTISLGEKIHEEAR*
Ga0153918_1008180Ga0153918_10081806F054481LLLLRHIAVELHPRGVSRPLVGHDGIYLIGVRGLKAKRIFISHNPAIAPTTEVLGPLKSACGLDSSHRQFGTLVSFSYDNNHEVGMATYDLTSHLSHYRWLRLNILNISNNRAIVKDLAGLDDNVGRVVLMRSGSNNRFLIMDVI*
Ga0153918_1008568Ga0153918_10085684F065291LILNLLEANCPLDESIDSMTIETLMFRHTESDRDTVADISQGDRGAISLGEEIHEEAR*
Ga0153918_1010043Ga0153918_10100432F048691MADQYGLTAEDYANDLRRLSNTRYTQGIPFFIILFLKQRLKPFQVIVATLMAYDFIYHIPQQVRLFICKQ*
Ga0153918_1015743Ga0153918_10157434F032889MLVSGFPSLDKIGDEDPDNNILSWADTTDSGNYQQVIVVAAILNNRDQYGDSDCEDTKTWKAHVPEWL
Ga0153918_1017502Ga0153918_10175021F000950LFRAWLIKLLEEDNDDLESPPEVINVNSASIEEIPDPIPPSGKENGTPKLDFPLGL
Ga0153918_1034940Ga0153918_10349401F002822MEKTNTLSNEKDILKEMTYGNLKKTYKMQAKSCRSIFRVYQKQDNFSMELELRREVMSQTSFSHISTNNCTIPTV*
Ga0153918_1042110Ga0153918_10421101F096889VVGAPDWKGITPAAEEVADPPPPVGCTMTCVAVMVVPLTVPSTRTGSPVVMALAEVELVPFWYVVVDASLTVTF*
Ga0153918_1054367Ga0153918_10543671F005099LIAGILLLAVPASPALAYWQFIERPAGVEVKPSPRYGTQKECEAALKKTEAALKKAYPDRYPLVGSCEEVR*
Ga0153918_1055709Ga0153918_10557092F101981MTFVRRVDNYDGSGCAFAVKPRASGAPQAALGLDRSAHPGKGAAMPQMQSGDVTK*
Ga0153918_1057929Ga0153918_10579291F058495MSSYVMYCRAQAAECARRAKLASSPELATERRNLGLRWLRLAEKAKATPLHRVREPAPKA
Ga0153918_1064506Ga0153918_10645062F033186MNKINNKIPWGLAMGTLGVTIAGAFNGTAIIGLASITGGAIALVIALLARQQMEKTKLNPELAMKLK*
Ga0153918_1069262Ga0153918_10692621F018233MVGILVVTQAALLIARRASTWTIDVHLGGLSPACVAVDQRSPAQVTAELRVTGLFRSRDGGRNWEPT
Ga0153918_1077763Ga0153918_10777632F050816MPVTLKALSARNVAAHTEWKATDLWLGVARPIPSPTLLER
Ga0153918_1078715Ga0153918_10787151F083491KSPKTISLFSSQVPENLKNPCKTRTMRMDYFCTEGRFISLKAWMTLCNNRSFRCTTICHPPDTQVGERPMSWSPEITGGLG*
Ga0153918_1081239Ga0153918_10812391F031829VATPTTRRQPASSTPPSGQQAQAQAQRQAYNRRKTRAKAKSEALRHKEAAQVQALPVLRPHAAGIDIGS
Ga0153918_1091459Ga0153918_10914591F027793DVLGLQSVAATAQLSRHNHRGGGGDSSSVRKNVCLITLNGSLNGLGILNILNGFGGL*
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Biomedical Sciences Research Center "Alexander Fleming"
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