NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012080

3300012080: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ005 MetaG



Overview

Basic Information
IMG/M Taxon OID3300012080 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121619 | Gp0175731 | Ga0153921
Sample NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ005 MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size221741090
Sequencing Scaffolds20
Novel Protein Genes22
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1
Not Available8
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAttine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
TypeHost-Associated
TaxonomyHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Fungus → Fungus corpus

Location Information
LocationUSA: New Jersey, Brendon T. Byrne State Forest
CoordinatesLat. (o)39.9182Long. (o)-74.5217Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000488Metagenome1084Y
F000950Metagenome822Y
F001077Metagenome / Metatranscriptome785Y
F001450Metagenome / Metatranscriptome692Y
F001603Metagenome / Metatranscriptome664Y
F002592Metagenome / Metatranscriptome545Y
F003922Metagenome461Y
F008285Metagenome335Y
F008983Metagenome324Y
F022125Metagenome215Y
F022722Metagenome / Metatranscriptome213Y
F035581Metagenome171Y
F042616Metagenome158Y
F054481Metagenome139Y
F065291Metagenome127Y
F077535Metagenome / Metatranscriptome117Y
F084799Metagenome / Metatranscriptome112Y
F088012Metagenome109Y
F091124Metagenome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0153921_1021822All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1533Open in IMG/M
Ga0153921_1031767All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1182Open in IMG/M
Ga0153921_1050539Not Available864Open in IMG/M
Ga0153921_1054579All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens819Open in IMG/M
Ga0153921_1059245Not Available774Open in IMG/M
Ga0153921_1067532Not Available709Open in IMG/M
Ga0153921_1068421Not Available703Open in IMG/M
Ga0153921_1069435Not Available696Open in IMG/M
Ga0153921_1073868Not Available667Open in IMG/M
Ga0153921_1076636All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens651Open in IMG/M
Ga0153921_1082458Not Available619Open in IMG/M
Ga0153921_1085380All Organisms → cellular organisms → Bacteria605Open in IMG/M
Ga0153921_1085693All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
Ga0153921_1098187All Organisms → cellular organisms → Bacteria → Proteobacteria550Open in IMG/M
Ga0153921_1098599All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
Ga0153921_1099981Not Available543Open in IMG/M
Ga0153921_1101516All Organisms → cellular organisms → Bacteria → Acidobacteria538Open in IMG/M
Ga0153921_1102130All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus536Open in IMG/M
Ga0153921_1105277All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus525Open in IMG/M
Ga0153921_1112968All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0153921_1021822Ga0153921_10218221F042616MNLAVAHCAERDQIFVCIVTQQASRANVMNLETIGTAAVLASPAVTLQHFGAEFAI
Ga0153921_1031767Ga0153921_10317672F001603MYATKADAQIVGDMEANIPFQFHAGNTKLPPGKYVVHALEDSDLTMMEISSADGSTSALFQVRPAEASSAPAKSELIFNKYGNRYFLAQLFDEGNPSGSTVIESRYEKGLSRAAAETQEHVPLHRRAQRGNSGS*
Ga0153921_1050539Ga0153921_10505392F000488LLKKESVTEKSLLERIEMEPTPSTKLYNRLIEADPCWYKVDDFYFAFCPPELHFCKTKKLLCIKEYKELLEPTLDCISPFFTKMSENKTWAEDPQYDSL*
Ga0153921_1053909Ga0153921_10539091F088012QADTIDTQTDDDVPQSIAFSRSGNMVATISEQSNIELLDTTTGGVVSRTDIDKQDYNGMRIAFSPDEDQVAFLSESLITICDTVHPNNRVSFNPWPGKRVQSWDVAFQTCNDLVICGDDDESALVQVWHRQDPAGFKCTHSLDIKIEKHWSSLPAPDGLTVVIVPRYSSAKCYSWNHDTAQFHPIDFVDNPVDIYEPDYSPDGRLFACWSRNDSHVRVWDTRTGQLVSKFPTSEVYGTAFSPTLIEHSPSDRLIALEHHSEIGLYGVYTGHLYA
Ga0153921_1054579Ga0153921_10545792F008983MQAHKALHPDKTQGTIFGPEAIGEKSGGKKNPDAMEIDEIQRKEGKSS*
Ga0153921_1059245Ga0153921_10592451F003922ELLLASNNLYSILCPEKLGNKFNCTNTTERVRHVQHTLWPLREVWMKVGLEKLENHEGVAVRALLDSGATGLFMDTTFA*
Ga0153921_1067532Ga0153921_10675321F000488MSTIRNIKTLAECLLLKKESITEKLLLERIEIEPTPSTKLYDRLIEADPCWYKVDDFYFAFCPLELHFCKTKKLLCIKKYKELLEPILDYILLFFTKMSENKTWTKDL*
Ga0153921_1068421Ga0153921_10684211F003922KLGNKFNCINTTERVRDIQHTLWLLREVWIKMGLEKLDNYEGIVVRVLLDSRATGLFIDTTFA*
Ga0153921_1069435Ga0153921_10694352F091124MLSSTVLVSKDNKRVSKNKGIEAARYRVNNGNRVLMLLI
Ga0153921_1073868Ga0153921_10738681F035581MLILANYNYVCWGARSSPSQVLTVLLTTALIIELDYHLKERIPTLDGLLEVTVTPLHVPLTMEHSTRFLLRKQ*
Ga0153921_1076636Ga0153921_10766361F000950MLEEDSDDPDSPPENVKINSTSIEEISDPVLPSGKGKRMSKLDFPLEL*
Ga0153921_1082458Ga0153921_10824581F054481LAVITMSAIDIYAITNSSDEEFPELLLLRHIAVELHPRGISRPLVGHDGIYFIGICGSEGKRIFISHNPTIPPTTDVLGPLDSSCGLESSHSQFGTMESFTYSLSQIGVATYDLISHFPHYRWLELSILSISIDGAIANDLAGLDDNVGRAVLICSGGNNHFLVMDVISMI*
Ga0153921_1085380Ga0153921_10853801F077535MMSLNELVKKYVAAAGGYDKFMAISSLGLSRSEAEKAFDILDEDYHISRFFQFRNDSGEAYEINGFAQTHFSIDSEIQSIL*
Ga0153921_1085693Ga0153921_10856931F001077LIYQLTWKILPGLRGLSCSDFRATPTAAPNTEQGVAIECANDTERDALLRELEDHFAPQRFSNNASAFETVKTYVLEKMAGKL*
Ga0153921_1094493Ga0153921_10944931F065291EENCPSDESIDCMTMESIRFCHSESNRDTETDILLGDRGATSMGEELHEAAR*
Ga0153921_1098187Ga0153921_10981871F022722GRNRLELGLYSPAESEYPFVVLNDTQLRAAGIFRLYGGSETPVVVLKNEGRDRSIYGLNPNSTEPFIVNYSNNGKKTSAFGDF*
Ga0153921_1098599Ga0153921_10985991F002592MTEKPEASVLTARRAAQHVRLSSRDDAYEHLCILTLLPSLAPLHLMLADTPWPHGFGATLASVGPLSEGFERSVASPLQPRRLRAMGRTV*
Ga0153921_1099981Ga0153921_10999811F084799MPRYYFHLTDGKNVLSNHQGIDLAGDAAAHADAVALAD
Ga0153921_1101516Ga0153921_11015161F001450MSPFPRIRVTRETHDTPAAIAERITRSGGTNRYGEPNFRVVWGGARLTWIGGRWTDRDSHGNATREAIELRRVPKYLPVDRWHIERWMPPEFYGSPEEWRALTSETEDGIRIPALGPYPARGDYEHCFTLQSAAGEFEPLSAAACDWIVRAIEWSHRQPRADQRAAL
Ga0153921_1102130Ga0153921_11021301F022125KGVRKDASTKDLGPCHRIKEGIYTKKGEGILTIERGKRGSTGICGRPVEEGIYPTLQVTPNIASILCGKKGWHMENGVRLSICKSVDSKEWVSLIPHHRYTGWSRREEGFYKAGPEVGIQ
Ga0153921_1105277Ga0153921_11052771F008285MGKADRLSRRPDWQEGVEKDNKDQKLIKPEWIRGAKTMVEEEDLKERIKRVQKEDERVVKAVEELKRAGIKTLKDEK*
Ga0153921_1112968Ga0153921_11129682F008285MGKADKLSRRPDWQEGVEKDNEDQKLIKPEWIRVAKTIIEEENLKKRIKKAQEGNKKVVKAVEELKRAGI
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