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Sample 3300013048
3300013048: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig MG (Metagenome Metatranscriptome)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300013048 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0127392 | Gp0191762 | Ga0164279 |
| Sample Name | Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig MG (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 33206756 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 3 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Location Information |
| Location | USA: Emeryville, California |
| Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F003009 | Metagenome / Metatranscriptome | 513 | Y |
| F021039 | Metagenome / Metatranscriptome | 220 | Y |
| F024692 | Metagenome / Metatranscriptome | 204 | Y |
| F035602 | Metagenome / Metatranscriptome | 171 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0164279_127535 | Ga0164279_1275351 | F021039 | KIGALKFITTNKKREVLAYGSTNANAEEGKPQEPLPPGETKTFDFLKSEGDSFPGYVVGFFGQYDENHVTYLGVYVAPLQEINYYARRAYILTYKKLQQDANLISDVAKKLGIEKEGDRFKDANLDDVDKNSSKIFLYFLDASLNHPELFKAVLEYL* |
| Ga0164279_135158 | Ga0164279_1351581 | F024692 | DDEAPGTSAAQKSGGGAVSEAKDAATNDFRETLRTVILLILNRLATALEYEQEGFSELATKLEMKNYMQLCAPQHFEAVIKETWDLDKTPPEKPDVPADHISFAQNKFIKLLEAAEKADWRDPSISPQELTDRIQEAVKATQKILRDSAIASNSSDLKIHLFFFAKCL |
| Ga0164279_138325 | Ga0164279_1383251 | F035602 | LKAIEFCDNGIACFVKGLQYEHDKDYHEALNCYENGAMQLDSLCLFRLHEIYSGDTNFGVEYNERQAMCHLAYSALLSQFETFDHKVTFWAKLEACWKKDAAHKDYLMELLNNPPADYLQSTGPLFAKLFTFYNNKETFIDLLPELKALSIDVTKNKFFAILNAIFDFMAYTYNSGFSKTDLEKYVETILDMLTNDILFENFFQNYVAHLRIIRAKKKFAFLFQRRLETDCFWVWSFSFLASMKNHYLGLLLSFEETFLEGGLILKWKNTESWVNNFIAFCYEKGIGTRKNLAKAAQLYKKDIDQMPRVLYSRYRKVLVVKEKRAHGLQLSQEEENINVDEQAEDLKLKIEERLEDTTRMDCYLFYVYGKIYEKIDEDNDRAIEWYQKGVDVDTDSCLKNHLLCNEAWRLKCKKRLLKLQARKGLQVSIVNKNRED* |
| Ga0164279_142889 | Ga0164279_1428891 | F003009 | MPITIFNLVRYFAVLSVSFHDVNSLFGFFILLTVFSQLVSGTMLSFSLIPEPMLVPIVRDEEDLEDLYTDDFF* |
