NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013053

3300013053: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig MG (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300013053 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127392 | Gp0191768 | Ga0164285
Sample NameEnriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig MG (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41288957
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → anthropogenic environment → compost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003009Metagenome / Metatranscriptome513Y
F004148Metagenome / Metatranscriptome450Y
F005470Metagenome / Metatranscriptome399Y
F040484Metagenome / Metatranscriptome161Y
F071833Metagenome / Metatranscriptome121Y
F076786Metagenome / Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0164285_117041Not Available746Open in IMG/M
Ga0164285_117293All Organisms → cellular organisms → Eukaryota649Open in IMG/M
Ga0164285_122659All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea4529Open in IMG/M
Ga0164285_131513All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum600Open in IMG/M
Ga0164285_136768Not Available926Open in IMG/M
Ga0164285_152579Not Available792Open in IMG/M
Ga0164285_154964All Organisms → cellular organisms → Eukaryota726Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0164285_117041Ga0164285_1170411F071833VECYNLERGSLESKPQYFERVNKCLDAWQRHFESVESNTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRREENERFANELKETFSQL*
Ga0164285_117293Ga0164285_1172931F005470MSVKLRKEGQVITEFPSEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVKEFLEKFDKGLNKMPKKPLLIFVTYNDWLDNNFDEKTREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGVVTQYQDFFTPEEEVKFIEKEFINKNDFEGVAAEDDEELNKE*
Ga0164285_122659Ga0164285_1226593F003009LAWYQRTYFNVNIGNLVKYFSILTVAFHDVHSLFGFFILLVVFSQLISGTMLSFSLVPESMMVPIVRDEEDLEDLYTDDFFWVHERGVDLLFIFS*
Ga0164285_131513Ga0164285_1315131F004148SFGNMGGNNVKGLYYMEIIFPMEDGRTVIPQEQLEKEFQKGTIVRPDPNRAKELDGDMDEYVDKVIQDIWRHYDPKGTGMMPTKVIKKFFKDSLDLCVLRKGLKKNQVVAPGVKMGEAMTQSIAKMTSNPQGATQKEFEDFVNCYDLEEALGAFLNIQEIGISHNVQLVDTNQFKEQAAAPKKVQYRDYSALEN*
Ga0164285_136768Ga0164285_1367681F040484MALAFKRAVVEAEKAVASANASIKDWYKPPVDPALIVDFDGIKAVEGVSTQNPNSVEGPKNITLCNWIKDYASRFHSVWGDIQYKDKERALPIAIKHIDHVVVHMDDKGVAGKYNSYSVEWKGKDIHITVHIDFTNYPQQLSLTDEKNGHVDQMIWAHLDEVCNMTYELRKATSIGYSSSQFNTYQKYLNDKLKKQVPIEVDWDSLAKLEGSSEEYSNKPPVPNRARAVTFLEDGRGFYNVYYAIEKLVGDALGLEAFLETFDKVNVSVSGDSTETRSGPHSVTKDGKTLKFQYKLNLTNLQN
Ga0164285_152579Ga0164285_1525791F071833KNYNINNSFQLIMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEGNPEYATRVNKCLDAWQKHFESVEDHTNKYLSNLRAKEALHFSKLFHCSNAINEKDIEACRKEENHRFANELKETFSQL*
Ga0164285_154964Ga0164285_1549641F005470MTSINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE*
Ga0164285_155744Ga0164285_1557441F076786LVAVAFAANPSQPTWPAAFSASILANDNMGDMRFFRWFYSQTLNKDRWDGPAVWGNEVYFSTMIFDHVANIQYDVFFQQELATCFTHTINTTIPRPNLAGFQYVGKAIVGQSPVFHWAETVIGQQNATCQYYDDQVSRDPTRLDFSYGTFAGTWNFMEFDDEPQDSSLFTLPSALLAQCNPVQAQ*
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