Sample 3300013120

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300013120

3300013120: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 250-2.7um, replicate a

Overview

Basic Information
IMG/M Taxon OID	3300013120 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118094 \| Gp0137033 \| Ga0171657
Sample Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 250-2.7um, replicate a
Sequencing Status	Permanent Draft
Sequencing Center	Georgia Genomics Facility
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	1033286945
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria → PVC group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	N/A	Depth (m)	900
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F013484	Metagenome / Metatranscriptome	271	Y
F018542	Metagenome / Metatranscriptome	234	Y
F021240	Metagenome	219	Y
F029285	Metagenome / Metatranscriptome	189	Y
F072364	Metagenome / Metatranscriptome	121	N
F075650	Metagenome	118	Y
F089552	Metagenome	109	Y
F099327	Metagenome	103	Y
F101182	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0171657_1038355	Not Available	4779	Open in IMG/M
Ga0171657_1043760	Not Available	4291	Open in IMG/M
Ga0171657_1080134	Not Available	2590	Open in IMG/M
Ga0171657_1081044	Not Available	2566	Open in IMG/M
Ga0171657_1082501	Not Available	2528	Open in IMG/M
Ga0171657_1094758	Not Available	2249	Open in IMG/M
Ga0171657_1106035	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
Ga0171657_1117680	Not Available	1873	Open in IMG/M
Ga0171657_1164762	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
Ga0171657_1197271	Not Available	1211	Open in IMG/M
Ga0171657_1214385	All Organisms → Viruses → environmental samples → uncultured marine virus	1133	Open in IMG/M
Ga0171657_1317302	Not Available	816	Open in IMG/M
Ga0171657_1366645	All Organisms → cellular organisms → Bacteria → PVC group	685	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0171657_1038355	Ga0171657_10383554	F013484	METRFDFPDGTLSTEHQALVETLNQFVATLPADDEQQQVAIRLGMELLELADVATQEEIARAAGYSERTLRLYKQRLQEEGLGGLFDQPIPGRPAVTTQPAVEGAVVQAILEAVIGQHTLPDDATLAAAVNRHLTDQQDPLAGQVTASMVETIRLGWGIQRLPVRQQLQAAQAPSPAAQEKVRLGRTLVGGAFVLAILLVEAGWLKLAQLLPMAPRYAVTGVQWLLTAIFAVIYDVRRAFHLDDVRDVGFALITGRPRPLSHGTFQHLLHHFPAEAGQRFYDTSARQEVETLEAGVRRVSVDGHNLPRYTTIVALTKGKIGSTGRILKAEELVLAFDLDAQRWLALRVYQGTNKLSLALPEIVVELCQHRGEGQGLWRIFFDKGGYKGQLFQSLAEMEDVHFYCPAVRYPDNVAQWEQLTTEDFDLEPFVFAKHADRQPQEQPVYRLADTEMTVNVWDKGQVVDTVTLRAVVIHDPQGQTPAERWPVVFLTDDREIDARALANEFGDHWGQESAHRVGKHDLCLDILPPGYTLTSQRDEQGQLQRQVEYDPTTLFLSAWLRCLVFNLMSRFAQALGGEYAKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQEALHPLLDRLNAKRVALPWLNGLVVQFSIAQDESLHPLTEPEKRQRLFGDG*
Ga0171657_1043760	Ga0171657_10437601	F099327	MGMEGFIQGTSGEDISLLVDGIKIMALQNLSWKASQSKSVIRGAGFRKPHAMGRGPKDFELDFEVKELNMGLLDVAINSARSAQTQLKAFTIGGIQFNDLLDLRNCTVLIMYPPKNNAQRIIRFLGFEFTDVEGGFSVDDEAVGRKLSGVAMDAEGLV*
Ga0171657_1080134	Ga0171657_10801342	F018542	MYLILSQPSQEYANAVSHELWMLARPRGLSDNETSQFYCGVHVHSDGRVAIGPIDQPQQVHANADELSFAELIGNAVTEAEEQAIIDAIVEAKGGTIQLLDIIAASPSLSPNLRTYEQLDADGWFPTEEI*
Ga0171657_1081044	Ga0171657_10810445	F075650	VTLENWVKLPVGKVVCMRFREYRVTSRQITDPMFGIPRTVESLVFLVSHVDGVEVDKTFSVVSEKLAQEFESYLEDGTYKNYEWCLVKDGVGFVPPRIAKRSRV*
Ga0171657_1082501	Ga0171657_10825012	F000388	MKVIKVTKEYFETEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKDNAIYGQ*
Ga0171657_1094758	Ga0171657_10947581	F013484	LHPDNEDGEAAVRLAMELLELADVAPQKEIVQAVGYAQSRSLRTYQQRLQEQGLGGLFDQPIPGRPAVTSQPTVERAVVQAVLAAVITEHALPDDDELAQAANRQLAETLWAGQVTASMVETIRLRLGIQRPTLAQQLQAALSTPSTAEDQMRLGRTRAGGAFILAVLLIETGWLKLAGLLPIVPGYTVTAVQWLLTAIFAVIYGVQRAFHLDDVRDIGFALITGRARPLTHGTFQHLLHHIPTQAAKAFYEATARRIVRGLGEGIRRISLDGHNLPRYTQIVDLVKGKIGNLGRVLKAEELVLAFDLDAREWLALRVYLGTNKLSTALLEMVAELRQHRAGLKGLLRLFFDKGGYKGQNFQTLVDRPDVHFYCPAVRYASNVEQWEQLSKDDFQAESFVFAKHSELPSEEQPAYRLADTEMTLNVRDEKNQVVDTVTLRAVVIQDPDGQTTAKRWPVTFLTDDREIDARELANEFGDHWGQEFGHRIGRHDLCLDILPPGYKLTSRRAENEDLQREVTYDPTAFFLSAWLRCLVFNLMTRFAQALGGACATMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQDELRPFLDELNAKRVGLPWLNDLIVQFSIAKAEPIHPLTEPEKRNRLFGDD*
Ga0171657_1106035	Ga0171657_11060353	F021240	MLDFNNSKSRIIIVDQEDRALLRSTPSAWSMPEDGQEHVFAHMLLPSRSSFGYKAKNLLSWCEAPIRVKQAKHISPVRHMSGNIIRVTQNRRLV*
Ga0171657_1117680	Ga0171657_11176801	F013484	MNAQINLADRTLSTENQAVVDAVNQFLAWLPDDADPKPTMRLAMAILEAADVAPQDSLAKAVGFAQSRSLREYIRRLQEEGLSGLWDHSIPGRPAITTHTSVEQVLFQVILSAVIAEHALPNDVTLAERVNQVLSEDQALAAGCVTASMVETIRLRWGIRRPILSRQLQATQETRALETDTARLGRTHAGGAFILAVLLLETGWLKLAHLLPIAAGYAVTATQWLLTAIFSNIYGIRRAFHLDDVRDVGFALLTGRPRPLTHGTFQHLRRAIPAEDAEKFYQASVELETQASGAGTRRISLDGHNLPRWTRLVDLTKGKIGNTGRILKAEELVLAYDLDSRLWVGLRVYHGTKKLSKGLLGIVRELLKHRGSLEGQLRLFFDKGGYSGQIFLALCEESQVRFYTPAVRYASNVSQWEKLKASDFDEDPFTFDKHADLPAEQRPVYRLADIEMTINVREGNKLVGTVTLRALVLYDPEGEKPAERWPLVLLTDDYETDARILLNEFGDHWGQETAHRIGKHDLLLDILPLGYVLTTRRDDQGQLQREVEYDQTAFFLSAWLRCLVFNLMSRFAQAMGGEYTKMWAGTLLRKFIRRPA
Ga0171657_1164762	Ga0171657_11647621	F021240	MLDFDNNQSRIEIIDQEDRALQRCNPSAWSMPEDGQEHVLAHMLHLFRSSFGYKAINLLSWCFAPTKALRSSITAPVRHMSAYIILFFAQKNF
Ga0171657_1197271	Ga0171657_11972713	F072364	ADGISGNSIKMFLDGVPVLALQNFNWKIKKNKKPLFGAGFKTAHGVTRSAHKTYEIDFEIKEILVNSAINVAQTTKNAALLAMFEDFTDIRNAVVIIMYPGAAAVRSKTFTGVEITDQEGGFSDSEDAEPIGVKCSGFATRATGLF*
Ga0171657_1214385	Ga0171657_12143851	F029285	KYRCPYHFLEKDCGHELMGPEGYENIFGVWCACGFRGPVFYLDPEDLKLEKIED*
Ga0171657_1317302	Ga0171657_13173021	F101182	MDTYEEGLQYERKMDRISEQIEELMLDAMIAALKKIRDRNLFYSDITSRPQNDPYPF*
Ga0171657_1366645	Ga0171657_13666452	F089552	VRVPTRQSERARIEKSFDVFGLNEESRRLIIEALDSREWDWFLGCDGCTCVSELHWPTKYFPPCLRHDFDWTRGKGGWAASRRFYELQRAYGVPVWRSSLRTGA

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