Sample 3300013283

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300013283

3300013283: Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01603

Overview

Basic Information
IMG/M Taxon OID	3300013283 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118444 \| Gp0135935 \| Ga0121716
Sample Name	Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01603
Sequencing Status	Permanent Draft
Sequencing Center	Weill Cornell Medical College
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	57817623
Sequencing Scaffolds	0
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Enhanced Biological Phosphorus Removal Bioreactor Microbial Communities From The University Of Queensland, Australia
Type	Engineered
Taxonomy	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge → Enhanced Biological Phosphorus Removal Bioreactor → Enhanced Biological Phosphorus Removal Bioreactor Microbial Communities From The University Of Queensland, Australia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: New York City
Coordinates	Lat. (^o)	-27.485973	Long. (^o)	-73.89	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081964	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0121716_100116	Ga0121716_10011639	F081964	MTTATCYRQQIVRAVTGRAPAITWSVTNSGALDRICARLVEAERAAEILQAKGYGKPGLLLHEVAALVPAVTR*

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