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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300013383 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118445 | Gp0134416 | Ga0116616 |
| Sample Name | Baboon gut microbial communities from fecal samples in Kenya - F07 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Duke University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 119044757 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | 1 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Baboon Gut Microbial Communities From Fecal Samples In Kenya |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | ||||||||
| Coordinates | Lat. (o) | 2.717 | Long. (o) | 37.1 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036964 | Metagenome / Metatranscriptome | 169 | Y |
| F042737 | Metagenome / Metatranscriptome | 157 | Y |
| F053097 | Metagenome / Metatranscriptome | 141 | Y |
| F074899 | Metagenome / Metatranscriptome | 119 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0116616_1000033 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | 121436 | Open in IMG/M |
| Ga0116616_1000051 | All Organisms → Viruses | 99844 | Open in IMG/M |
| Ga0116616_1002026 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 4459 | Open in IMG/M |
| Ga0116616_1044622 | Not Available | 523 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0116616_1000033 | Ga0116616_100003360 | F042737 | MVLTSKSSEVFEYLKNNGGKVSIEELANATGRSARSVGANVLDLTKKGLVVREKEEVEGAEKPVAYAVLTDAGKNFVPSEDAE* |
| Ga0116616_1000051 | Ga0116616_100005133 | F053097 | MFDIQGSKIILKTDDLAIPPFRDFYNNAKNKQDAIKKIEFIIWRYKWNTPYEAYPEKERTWRVAKDVFNNKDYIPDA* |
| Ga0116616_1002026 | Ga0116616_10020262 | F074899 | MRGWKQWSKQAVTSSFLDKKLPKSLVQQGLEGATAVGKDEVGSSNLPSSSTKSL* |
| Ga0116616_1044622 | Ga0116616_10446222 | F036964 | MEPLKIIFPLLMVAGALGSLVVNIVSKGDWATSLQWLGACLLYTALTVRNMS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |