Sample 3300013726

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300013726

3300013726: Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA - CF1-1-St-MgMD-nonhuman

Overview

Basic Information
IMG/M Taxon OID	3300013726 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118644 \| Gp0137861 \| Ga0117822
Sample Name	Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA - CF1-1-St-MgMD-nonhuman
Sequencing Status	Permanent Draft
Sequencing Center	San Diego State University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	25513887
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Lung Microbial And Viral Communities From Cystic Fibrosis Patients In San Diego, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Respiratory System → Sputum → Unclassified → Human Lung → Lung Microbial And Viral Communities From Cystic Fibrosis Patients In San Diego, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal corpus

Location Information
Location	USA: San Diego
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054109	Metagenome	140	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0117822_106481	Not Available	867	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117822_106481	Ga0117822_1064812	F054109	MVGRPKSKKGTKVHTAFKIYPVDKERAQAMADKLDMSLSAYINKAVLEKVERDEKSEN*

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