NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013830

3300013830: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1239



Overview

Basic Information
IMG/M Taxon OID3300013830 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118654 | Gp0138582 | Ga0120377
Sample NameSheep rumen microbial communities from Wyoming, USA - O_aries_Con_1239
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Missouri
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size181596033
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-781

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRuminant Gut Microbial Communities From Various Locations In Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationUSA: Wyoming
CoordinatesLat. (o)41.314168Long. (o)-105.584589Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035626Metagenome / Metatranscriptome171Y
F067315Metagenome / Metatranscriptome125Y
F082826Metagenome / Metatranscriptome113Y
F097402Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0120377_1002831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10159Open in IMG/M
Ga0120377_1016792All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1561Open in IMG/M
Ga0120377_1031178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii844Open in IMG/M
Ga0120377_1038388All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78691Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0120377_1002831Ga0120377_100283116F067315MNKLEDFSNWLQIFSFLILIEDFNNTDLMKYLAHQDDLLNKIIDQNNELITLLKGGK*
Ga0120377_1016792Ga0120377_10167921F082826MANKYTIEFNYNASIVVDVEGEFHDEGEALDKAREIAEDADINEFTIGEERESKILNVR
Ga0120377_1031178Ga0120377_10311782F097402MTNLDHIQSLIHHGAQLRGEDGSLTPLTKAFYHNAVEACHTGGYNAATYDLVLPGIDSELWLAIWKDGHADSGSPKSICACLAR*
Ga0120377_1038388Ga0120377_10383881F035626MAPLIINNDAVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTADIRGDLIFDRFEPQPSAPHCHDGHDLALLLDSALEAAPASASTLNSEPTAPIEDGRLDATSGAAIQTAIEPNTNPVLCEA
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