Sample 3300013862

3300013862: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In2P SAF170 SPAdes reassembly

Overview

Basic Information
IMG/M Taxon OID	3300013862 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095512 \| Gp0111876 \| Ga0181459
Sample Name	Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In2P SAF170 SPAdes reassembly
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	27255060
Sequencing Scaffolds	42
Novel Protein Genes	46
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	3
All Organisms → cellular organisms → Eukaryota	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Myrtales → Myrtaceae → Myrtoideae → Syzygieae → Syzygium → Syzygium oleosum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → unclassified Caballeronia → Caballeronia sp. ATUFL_F1_KS39	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
Type	Engineered
Taxonomy	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	USA: Jet Propulsion Laboratory, Pasadena, California
Coordinates	Lat. (^o)	34.1	Long. (^o)	-118.1	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017428	Metagenome	240	Y
F023843	Metagenome / Metatranscriptome	208	Y
F028713	Metagenome / Metatranscriptome	190	Y
F033665	Metagenome / Metatranscriptome	176	Y
F034461	Metagenome / Metatranscriptome	174	Y
F044253	Metagenome	154	Y
F046363	Metagenome / Metatranscriptome	151	Y
F057039	Metagenome / Metatranscriptome	136	Y
F059667	Metagenome / Metatranscriptome	133	Y
F065416	Metagenome / Metatranscriptome	127	Y
F065766	Metagenome / Metatranscriptome	127	Y
F072954	Metagenome / Metatranscriptome	120	Y
F078089	Metagenome	116	Y
F078199	Metagenome / Metatranscriptome	116	Y
F093243	Metagenome / Metatranscriptome	106	Y
F100750	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0181459_100002	Not Available	39952	Open in IMG/M
Ga0181459_100110	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	14942	Open in IMG/M
Ga0181459_100118	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	14556	Open in IMG/M
Ga0181459_100143	Not Available	14037	Open in IMG/M
Ga0181459_100219	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	12114	Open in IMG/M
Ga0181459_100227	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	12017	Open in IMG/M
Ga0181459_100272	Not Available	11336	Open in IMG/M
Ga0181459_100382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	9846	Open in IMG/M
Ga0181459_100411	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	9522	Open in IMG/M
Ga0181459_100481	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	9051	Open in IMG/M
Ga0181459_100523	Not Available	8802	Open in IMG/M
Ga0181459_100556	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	8572	Open in IMG/M
Ga0181459_100576	Not Available	8413	Open in IMG/M
Ga0181459_100590	All Organisms → cellular organisms → Eukaryota	8289	Open in IMG/M
Ga0181459_100739	Not Available	7422	Open in IMG/M
Ga0181459_100749	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	7364	Open in IMG/M
Ga0181459_100762	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	7318	Open in IMG/M
Ga0181459_100802	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	7176	Open in IMG/M
Ga0181459_100829	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	7045	Open in IMG/M
Ga0181459_100966	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	6467	Open in IMG/M
Ga0181459_101031	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	6227	Open in IMG/M
Ga0181459_101068	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	6070	Open in IMG/M
Ga0181459_101346	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5214	Open in IMG/M
Ga0181459_101479	Not Available	4874	Open in IMG/M
Ga0181459_101482	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Myrtales → Myrtaceae → Myrtoideae → Syzygieae → Syzygium → Syzygium oleosum	4864	Open in IMG/M
Ga0181459_101699	Not Available	4348	Open in IMG/M
Ga0181459_101732	Not Available	4276	Open in IMG/M
Ga0181459_102055	Not Available	3616	Open in IMG/M
Ga0181459_102130	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	3457	Open in IMG/M
Ga0181459_102213	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	3286	Open in IMG/M
Ga0181459_102277	All Organisms → cellular organisms → Eukaryota	3192	Open in IMG/M
Ga0181459_102728	All Organisms → cellular organisms → Eukaryota	2484	Open in IMG/M
Ga0181459_102894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → unclassified Caballeronia → Caballeronia sp. ATUFL_F1_KS39	2291	Open in IMG/M
Ga0181459_103499	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1713	Open in IMG/M
Ga0181459_103866	Not Available	1488	Open in IMG/M
Ga0181459_104184	Not Available	1329	Open in IMG/M
Ga0181459_104391	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
Ga0181459_104795	Not Available	1085	Open in IMG/M
Ga0181459_107268	Not Available	629	Open in IMG/M
Ga0181459_107466	All Organisms → cellular organisms → Eukaryota	609	Open in IMG/M
Ga0181459_108091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	555	Open in IMG/M
Ga0181459_108335	Not Available	539	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181459_100002	Ga0181459_10000244	F078089	MGSPEGRIIEQAYVILLKLDKNKEVLVSNDWGKIGKVT*
Ga0181459_100110	Ga0181459_1001103	F046363	MVLDASACINMYYNIEINIMKNQVGSPGFWIQGKISMHMCFMCYDLALFIFFV*
Ga0181459_100118	Ga0181459_1001185	F028713	MIEDKKVLLVKVDTLKNTADALTKSMSSEKFSWCRETMVVSGMEK*
Ga0181459_100143	Ga0181459_10014316	F023843	MASNGKIEIEEFNHHSFEFWKVKMEGLLVDKDKWVMVDPSSKSMGVSDEEWKKLDQKAKITI*
Ga0181459_100219	Ga0181459_10021916	F046363	LDASACINMYYNIERNIMKNQVGSPGFGIQGKISVYMCFMCYSLALFIFCVLEFVCR*
Ga0181459_100227	Ga0181459_10022716	F034461	MENPQKMLGYDFEIIYKKGKQNVVANALSRKDEDVEALLCAISIIQPNWINEAREKWKNNEEVWVLI*
Ga0181459_100272	Ga0181459_1002729	F044253	MLLRYISTEEKDADILTKDLLRRKFEFHRSRIGVYYNPFLVEREC*
Ga0181459_100382	Ga0181459_1003826	F100750	MIEHIEDFQKLNIRVNDIPKKNMVDVFIWTLRDNIQHEVCLWEPDSLEKAFRLARKIESEIMETRNPTTHNYNYGSVFFS*
Ga0181459_100411	Ga0181459_1004118	F044253	MLLEYIPTEERDANILTKALSRGKFEFHRGRIGVSDNLFLVERECLKCKKKIWI*
Ga0181459_100481	Ga0181459_1004813	F078089	LPEGQIIEQAYVMLLNLEKNKEVLVSNDWGKRGKNLMNLW*
Ga0181459_100523	Ga0181459_10052312	F093243	MLLSYIPTEDQDADILTKVLTRSKLEYHQGRIGVANNPYLVEREC*
Ga0181459_100556	Ga0181459_1005565	F017428	MVDIEGVSVLAYFEVINIIDENNPYPMLQGIDWAIDMNGVINLKKCKMIFEKNSLHIVVSLDPMEGLCYTKPVCDDDLDYIYKITTQE*
Ga0181459_100576	Ga0181459_1005769	F046363	MVLDAMVFRSMVLDASACTNMYCNIERNIMKNQAGSPSFGIQGKISVHMCFMCSALTLLILFV*
Ga0181459_100590	Ga0181459_1005903	F046363	MVLDVSACINIYCNIERNIMKNQAGSPGFGIQGKIFVYMCFVCYCLALFIFHALEFVCK*
Ga0181459_100715	Ga0181459_1007157	F072954	MFDKRTKAEDFFIGKKVLIWDSRREDKGKHGKFDFLWKGAYVIQDVQGNNTYFLKSSVGTEAEDGPVSGRMLKHYFDPFLM*
Ga0181459_100739	Ga0181459_10073915	F023843	MPSSGKIEIEKFNGQSFELWKLKMEDLLVDKDQWIMVDPCTKPIGVSDE*
Ga0181459_100749	Ga0181459_1007495	F028713	MVEDKKVLLVKVDTLKNVVDALTKTVRTDKFSRCIETICIIAMDQ*
Ga0181459_100762	Ga0181459_1007627	F028713	MIEDKKVLLVKVDTLNNTADAWTKSVSSEKFSWCRETMVVSWLEK*
Ga0181459_100762	Ga0181459_1007628	F046363	MFFGRDGFRSMVLDASACINMYYNIERNIMKNQVGSPGFGIQGKISVYMCFKCYALTLFIFCVLEFVCR*
Ga0181459_100802	Ga0181459_1008021	F023843	MASSGKIEIEKFNGQSFELWKLKMEDLLVDKDQWVMVDLGNKPMWCSMKNGRS*
Ga0181459_100829	Ga0181459_1008294	F078089	MGLPKGKIIEQAYVIILKLDKNKEVLVSNDWGKIGKKT*
Ga0181459_100966	Ga0181459_1009663	F033665	MKIGGEAKQHEISKTQKWFGQIVPGLRDIKIINIFNGVPKSKLMKNKILMGINIKLG*
Ga0181459_101031	Ga0181459_10103111	F017428	MENKQKIIPMGRLQGVTVDIEGVSALVDIEVIEIFDDNNPYPMLLGIYWAIDMNGVINLKKWTMLFEMKSLYVVVPLDHVEGPHYSELIHNNEERDDDLDQIYKITA*
Ga0181459_101068	Ga0181459_1010685	F078089	MGFPEGKIIEQAYVTLLKLDKNKEVLVSNDWGKIGKKT*
Ga0181459_101346	Ga0181459_1013462	F078199	MLVYDFEIIYKNGKKNIVADALSRKDEDVEEFLSAISIIQPKWMLA*
Ga0181459_101479	Ga0181459_1014799	F093243	MLLSYIPMEDQDADILTKALTKRKFEYHRGKIGVADNPYLVENSTR*
Ga0181459_101482	Ga0181459_1014824	F028713	VRDMIEDNKVLLVKVDTLKNTTDALTKFVSSEKFAWCRETMGFSGLEK*
Ga0181459_101699	Ga0181459_1016992	F034461	LGYEFDIIYRKGKKFFVADALSRNDEDVEALFCAISIIQPDWINEARDE*
Ga0181459_101732	Ga0181459_1017324	F033665	MKIGGEDKTHEISKTHKWFGQILHGLGDIKIINIFNGVPMSKLRKNKILMGINIKLG*
Ga0181459_102055	Ga0181459_1020552	F044253	MLLDYIPMEDQDAHILTKAFSRCKFEFQRDRIGVANSPFLVEREH*
Ga0181459_102130	Ga0181459_1021307	F046363	MVLDAMVFRSMVLDASACINMYCNIERNIMKNQAGSPSFAIEGEIFVHMCFMCSALALFILFV*
Ga0181459_102213	Ga0181459_1022132	F046363	MVLDTMVFWSMVLDASACINMYCNFKMNIMKNQAGSPGFGIQGKISVHMRFMFYALALFIFFV*
Ga0181459_102277	Ga0181459_1022775	F046363	MVLDASTCINMYCNIERNIMKNQAGSPGFGIQGKISVHMCFMCYALTFVIFFV*
Ga0181459_102728	Ga0181459_1027283	F046363	MIFGHNGFRSMVLDASACINMYYNIERNIMKNQAGSPGFGIQGKISMYMCFMCYALALFILCVLEFLCR*
Ga0181459_102894	Ga0181459_1028944	F065416	MSPTRSGYKEFGLALVEALQDQPRKSRRLPMEDEKNDKGARDPIKILLKEALQ*
Ga0181459_103499	Ga0181459_1034991	F046363	HMVLDAMVFRSMVLDASACINMYCNIERNIMKNQAGSPGFGIQGKISVHMCFMGYALALFIFFV*
Ga0181459_103866	Ga0181459_1038662	F065766	MADENKDKGARDPIKILLEEALEQQRNVMMDNFSHIL*
Ga0181459_104184	Ga0181459_1041841	F033665	LRTIVPNIAKAFDVSGPFILIWGSNRCDLGMKIGGEDKAHEISRTQQWFGKILPDLGDIKIINIFNGFPKSKLRKNKILMGINIKLG*
Ga0181459_104391	Ga0181459_1043911	F028713	VRDIVELDKKVLLVKVDTLKNSVDALTNYVSTKKFSWCREKMGIAGFDQ*
Ga0181459_104795	Ga0181459_1047951	F023843	MVNSGKIEIDKFNGQSFDFWKLNMEDLLLDKDQRIMVDLGTKPMSMSVEDWEKLDQKEKRAI*
Ga0181459_105986	Ga0181459_1059861	F072954	GSTQVLQEKLKKAFDRRTKAEDFFIGDKVLRWDSRREDKGKHGKFDFLWMGPYVICAIQGNNTYFLKSLDGSNTEEGPVNGRMLKHYFAPPLIKN*
Ga0181459_107268	Ga0181459_1072681	F078089	MGLPKGKIIEQAYVILLKLDKNKEVLVSNDWGKIGKKT*
Ga0181459_107466	Ga0181459_1074661	F059667	NTKGNTKCKAKNLFNVALLTLNPPQMNSTISCPTQGIALIKLVITVAPHKLICP*
Ga0181459_108091	Ga0181459_1080912	F034461	ALSRKDEDVEALLCAISIIQPDWINEAREEWKNDEEVWALIQKLQQDSSTSDTFSITYTFVRIPS*
Ga0181459_108257	Ga0181459_1082571	F072954	VYDRAQILQEKLKKMFDKRAKAEDFCVGNKVLRWDSRREDKGKHAKFDFLWKGPFVISVVQGNNTYFLKSTDGSTTEEGHVNGR
Ga0181459_108335	Ga0181459_1083351	F057039	MVVQVVEWEWIFEMDVIGVLFVVEVNGRDNMELGMDYNEENIEDIVDGSHKFLANLVAKIDFGVEMVNVIKERVCSNYFEMDVHKIEIVN*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013862: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In2P SAF170 SPAdes reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences