NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013968

3300013968: Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1787



Overview

Basic Information
IMG/M Taxon OID3300013968 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118649 | Gp0138551 | Ga0120347
Sample NameFecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1787
Sequencing StatusPermanent Draft
Sequencing CenterFreie University Berlin
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size473759
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany: Berlin
CoordinatesLat. (o)52.529611Long. (o)13.401343Alt. (m)N/ADepth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057003Metagenome / Metatranscriptome137Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0120347_1017All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.1511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0120347_1017Ga0120347_10172F057003MANFIDVSNLAYSGKEAQEIFAKDIYDIDLRNYGVTYMDGVKGKTKIYSGDMGEAWQEYTCPFSPKGKVSLAESYIEPKAIKVNQENCYDTFWNTFLVDQTSISLAGGIPQTFADWYFDRLRKQMAKEYQEIAWQGDTARTATTKTYLKVVDGWEKQLKASAQNIEVEAFTVDNIVSQVEALIMKGLEKASAEDVPTDGYKVFMNYSDVKVLEVALGKLSVGNSANQIFGNYSKNADGSINVYGFQIVPTMMSRNKAVFGPAKNLVLGYDTFDSHIEYKLIDMRETTLDNTFRVAAISNIAVGVVLPELFTILG*

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