Sample 3300013968

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300013968

3300013968: Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1787

Overview

Basic Information
IMG/M Taxon OID	3300013968 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118649 \| Gp0138551 \| Ga0120347
Sample Name	Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1787
Sequencing Status	Permanent Draft
Sequencing Center	Freie University Berlin
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	473759
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Germany: Berlin
Coordinates	Lat. (^o)	52.529611	Long. (^o)	13.401343	Alt. (m)	N/A	Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057003	Metagenome / Metatranscriptome	137	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0120347_1017	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120347_1017	Ga0120347_10172	F057003	MANFIDVSNLAYSGKEAQEIFAKDIYDIDLRNYGVTYMDGVKGKTKIYSGDMGEAWQEYTCPFSPKGKVSLAESYIEPKAIKVNQENCYDTFWNTFLVDQTSISLAGGIPQTFADWYFDRLRKQMAKEYQEIAWQGDTARTATTKTYLKVVDGWEKQLKASAQNIEVEAFTVDNIVSQVEALIMKGLEKASAEDVPTDGYKVFMNYSDVKVLEVALGKLSVGNSANQIFGNYSKNADGSINVYGFQIVPTMMSRNKAVFGPAKNLVLGYDTFDSHIEYKLIDMRETTLDNTFRVAAISNIAVGVVLPELFTILG*

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