NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014026

3300014026: Human oral microbial communities from Los Angeles, CA, USA - S17-03-R



Overview

Basic Information
IMG/M Taxon OID3300014026 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113963 | Gp0134637 | Ga0119807
Sample NameHuman oral microbial communities from Los Angeles, CA, USA - S17-03-R
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size199400361
Sequencing Scaffolds10
Novel Protein Genes14
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae3
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
Not Available1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F040149Metagenome162N
F046431Metagenome151Y
F046432Metagenome151Y
F055792Metagenome138N
F070224Metagenome123N
F077403Metagenome117N
F084362Metagenome112N
F101358Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119807_1000283All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae70225Open in IMG/M
Ga0119807_1000317All Organisms → cellular organisms → Bacteria64317Open in IMG/M
Ga0119807_1000603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium40221Open in IMG/M
Ga0119807_1000697All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae36196Open in IMG/M
Ga0119807_1000896All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae29642Open in IMG/M
Ga0119807_1000899All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium29512Open in IMG/M
Ga0119807_1001443All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27920072Open in IMG/M
Ga0119807_1002333All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria13045Open in IMG/M
Ga0119807_1014048Not Available2081Open in IMG/M
Ga0119807_1037104All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium748Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119807_1000283Ga0119807_100028327F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLFASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIVRKVGGSLIIENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTKRFSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEACIIH*
Ga0119807_1000283Ga0119807_100028328F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRHTSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYDHPEAHMIH*
Ga0119807_1000283Ga0119807_100028329F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLFASPLRPAKTRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPMALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0119807_1000317Ga0119807_100031789F084362MNCTFTVRWSDDKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETEAGQKGFWWEK*
Ga0119807_1000603Ga0119807_10006033F046431MKKISRIGITIILILSIIISYGSVIISRAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGLNNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR*
Ga0119807_1000697Ga0119807_10006973F077403MDTIMPLLRRFVLIILLLSAVRAIHAEERVSVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPRWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM*
Ga0119807_1000896Ga0119807_100089615F022002MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARTIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENEI*
Ga0119807_1000896Ga0119807_100089616F022002MKNIYSPSFRSMSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEGGTHAGSNDVSYTVTGLNYARRPTQSVCMSFYKGHLRRISFIFDDLDVLEQIESELEDKYGTMAEGVGTSNMKSKVVFDAFTRLLVVRGFKHEGYFGFKDAYIIYSDEELDRARSAEKKSEI*
Ga0119807_1000899Ga0119807_10008996F046431MLKKVIQKGVKVILIMTMVLSMIIAYSNTIISNAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASSFETIGLTDFSNVDEEVKVLNVYPVPTAVYNTPNVQVTYLDGSSEVIPKTALLKVWMEGRNSKRRWKYN*
Ga0119807_1001443Ga0119807_100144312F040149VADEGAEELRWEVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWNHDSEDAIDHFIYDASVPKGHALTAVRE*
Ga0119807_1001443Ga0119807_100144313F055792MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLEPRIIGKAMKPIALPHVARLDEGIPLQRIGXXXXLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0119807_1002333Ga0119807_10023332F046432MQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFRVIENQTTHQKYLLMNTYSHHGVESELEYYREEGFSNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS*
Ga0119807_1014048Ga0119807_10140482F084362MNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRDVDVAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK*
Ga0119807_1037104Ga0119807_10371042F101358PKRQDVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIDRLEKCVPLAVLQEQNIDFTNAYLQKAYGVMEKDGKLQPVADTTHATHQNDSTDEQETEVMPAQGGDTYEHLSGGSARQLVGSVAAKASDGEVDNSPLVERVPGRVE*
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