NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014088

3300014088: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_046



Overview

Basic Information
IMG/M Taxon OID3300014088 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121296 | Gp0151533 | Ga0134361
Sample NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_046
Sequencing StatusPermanent Draft
Sequencing CenterThe George Washington University (GWU)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14425051
Sequencing Scaffolds2
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Maryland
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F043991Metagenome155N
F051214Metagenome144N
F063778Metagenome129Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134361_100137All Organisms → Viruses → Predicted Viral4555Open in IMG/M
Ga0134361_106011All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134361_100137Ga0134361_1001372F018385MAEYENQWGPYKEHSIERDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0134361_100137Ga0134361_1001374F051214MPGKIVAHDTHLRIDTEFIDLKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0134361_100137Ga0134361_1001375F043991MSKKTPSVIDYFSLNGDVVEEANEFDGISLDDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTPNIIYADILFTGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA*
Ga0134361_100137Ga0134361_1001378F027205MRAVKESEEFERKALKEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0134361_106011Ga0134361_1060111F063778GSHLMPETISEGAKQQLLQKLQGALGLVKDADPSAHDVAAITHSAADGHRLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED*
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