Basic Information | |
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IMG/M Taxon OID | 3300014096 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121296 | Gp0151524 | Ga0134352 |
Sample Name | Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_210 |
Sequencing Status | Permanent Draft |
Sequencing Center | The George Washington University (GWU) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 59032487 |
Sequencing Scaffolds | 8 |
Novel Protein Genes | 14 |
Associated Families | 13 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 | 2 |
All Organisms → Viruses → Predicted Viral | 1 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1 |
Not Available | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal secretion |
Location Information | ||||||||
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Location | USA: Maryland | |||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F027205 | Metagenome | 195 | N |
F032313 | Metagenome | 180 | N |
F036281 | Metagenome | 170 | N |
F051214 | Metagenome | 144 | N |
F054110 | Metagenome | 140 | N |
F066860 | Metagenome | 126 | N |
F068942 | Metagenome | 124 | N |
F071329 | Metagenome | 122 | N |
F074985 | Metagenome | 119 | N |
F081456 | Metagenome | 114 | N |
F081510 | Metagenome | 114 | N |
F085820 | Metagenome | 111 | N |
F103436 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0134352_100045 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 37824 | Open in IMG/M |
Ga0134352_100068 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 | 30384 | Open in IMG/M |
Ga0134352_100114 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473 | 20911 | Open in IMG/M |
Ga0134352_100487 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 8547 | Open in IMG/M |
Ga0134352_106511 | All Organisms → Viruses → Predicted Viral | 1621 | Open in IMG/M |
Ga0134352_110068 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1113 | Open in IMG/M |
Ga0134352_111737 | Not Available | 976 | Open in IMG/M |
Ga0134352_118634 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 651 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0134352_100045 | Ga0134352_10004513 | F081456 | MFEESPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAD* |
Ga0134352_100045 | Ga0134352_10004526 | F071329 | MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHIEIED* |
Ga0134352_100045 | Ga0134352_10004527 | F051214 | MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDIDDILVICNATDIIEYQLKNGDSFVVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA* |
Ga0134352_100045 | Ga0134352_10004531 | F027205 | VASRLIVTADDILKAVKESEEFERKALKEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK* |
Ga0134352_100045 | Ga0134352_10004532 | F036281 | MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLEDVEWTADTIRYF* |
Ga0134352_100045 | Ga0134352_10004533 | F074985 | MELTDGGWYKPPRIIKGKDFLAQIQDTLACGNEMLVKFSVNDEPNRVTHFRKLYDLGVDNAYLFSIADRPRGSVLVRDIAEFEFIQYRPQTAWVAIHMGSIKRINLEQFDEIFISDTFRHLKPVIVNHDSKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADTILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID* |
Ga0134352_100068 | Ga0134352_10006822 | F032313 | MACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK* |
Ga0134352_100068 | Ga0134352_10006823 | F032313 | MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWNGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK* |
Ga0134352_100114 | Ga0134352_10011411 | F085820 | MRSTFYLFAVLFLATTFFSCETDEPAPRPTWGEIVNPIEAFMYPRDLKVFADDNDGRRWLILVIPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKGIRVLRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSDKRKK* |
Ga0134352_100487 | Ga0134352_10048711 | F081510 | MKLPKLNVKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRMDVIKDVTKDIAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA* |
Ga0134352_106511 | Ga0134352_1065114 | F054110 | VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKHGQLYKKESEYSSTK |
Ga0134352_110068 | Ga0134352_1100682 | F066860 | MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGGVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDRE* |
Ga0134352_111737 | Ga0134352_1117372 | F068942 | MIRKILSLPTLALCFTLGSAFFAGCNEDYIKDTETKVRWSNVKPPQYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ* |
Ga0134352_118634 | Ga0134352_1186342 | F103436 | MSNKGWRDKTDSEIFDSLRDWAMKCDLKYSKSDALYKVKLAQCLWGDAKYVEAVHLLDENEVFFEKSDWSYYALGIEILKARKHKFFDEQRDEKV* |
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