NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014096

3300014096: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_210



Overview

Basic Information
IMG/M Taxon OID3300014096 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121296 | Gp0151524 | Ga0134352
Sample NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_210
Sequencing StatusPermanent Draft
Sequencing CenterThe George Washington University (GWU)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size59032487
Sequencing Scaffolds8
Novel Protein Genes14
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 4732
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Maryland
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F032313Metagenome180N
F036281Metagenome170N
F051214Metagenome144N
F054110Metagenome140N
F066860Metagenome126N
F068942Metagenome124N
F071329Metagenome122N
F074985Metagenome119N
F081456Metagenome114N
F081510Metagenome114N
F085820Metagenome111N
F103436Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134352_100045All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes37824Open in IMG/M
Ga0134352_100068All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47330384Open in IMG/M
Ga0134352_100114All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 47320911Open in IMG/M
Ga0134352_100487All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes8547Open in IMG/M
Ga0134352_106511All Organisms → Viruses → Predicted Viral1621Open in IMG/M
Ga0134352_110068All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1113Open in IMG/M
Ga0134352_111737Not Available976Open in IMG/M
Ga0134352_118634All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus651Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134352_100045Ga0134352_10004513F081456MFEESPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAD*
Ga0134352_100045Ga0134352_10004526F071329MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHIEIED*
Ga0134352_100045Ga0134352_10004527F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDIDDILVICNATDIIEYQLKNGDSFVVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0134352_100045Ga0134352_10004531F027205VASRLIVTADDILKAVKESEEFERKALKEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK*
Ga0134352_100045Ga0134352_10004532F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLEDVEWTADTIRYF*
Ga0134352_100045Ga0134352_10004533F074985MELTDGGWYKPPRIIKGKDFLAQIQDTLACGNEMLVKFSVNDEPNRVTHFRKLYDLGVDNAYLFSIADRPRGSVLVRDIAEFEFIQYRPQTAWVAIHMGSIKRINLEQFDEIFISDTFRHLKPVIVNHDSKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADTILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0134352_100068Ga0134352_10006822F032313MACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK*
Ga0134352_100068Ga0134352_10006823F032313MYRFLILIFALTLMACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWNGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0134352_100114Ga0134352_10011411F085820MRSTFYLFAVLFLATTFFSCETDEPAPRPTWGEIVNPIEAFMYPRDLKVFADDNDGRRWLILVIPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKGIRVLRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSDKRKK*
Ga0134352_100487Ga0134352_10048711F081510MKLPKLNVKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRMDVIKDVTKDIAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA*
Ga0134352_106511Ga0134352_1065114F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKHGQLYKKESEYSSTK
Ga0134352_110068Ga0134352_1100682F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGGVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDRE*
Ga0134352_111737Ga0134352_1117372F068942MIRKILSLPTLALCFTLGSAFFAGCNEDYIKDTETKVRWSNVKPPQYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ*
Ga0134352_118634Ga0134352_1186342F103436MSNKGWRDKTDSEIFDSLRDWAMKCDLKYSKSDALYKVKLAQCLWGDAKYVEAVHLLDENEVFFEKSDWSYYALGIEILKARKHKFFDEQRDEKV*

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