NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014105

3300014105: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_017



Overview

Basic Information
IMG/M Taxon OID3300014105 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121296 | Gp0151510 | Ga0134338
Sample NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_017
Sequencing StatusPermanent Draft
Sequencing CenterThe George Washington University (GWU)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18373844
Sequencing Scaffolds1
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Maryland
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F051214Metagenome144N
F071329Metagenome122N
F081456Metagenome114N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134338_100001All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes40767Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134338_100001Ga0134338_10000110F027205VASRLIVSADDILKAVKESEEFERKALKEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELANEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0134338_100001Ga0134338_10000115F051214MPGKIVPYETHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYVYNNREYQIACEFLRQIMHDKIDLNKEWLA*
Ga0134338_100001Ga0134338_10000116F071329MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVEEARDHIEIED*
Ga0134338_100001Ga0134338_10000118F018385MADLINSWLPYQELSIEKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFSHDGMNELVFMPGSRRRIVSQLSLDNSGKKEVD
Ga0134338_100001Ga0134338_10000129F081456MFEEPPIYYILISLIFLIVFGAISFATWMVWLTYISFFAKLVVTAIGFLLCAMTVILYTISAE*
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