Basic Information | |
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IMG/M Taxon OID | 3300014548 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121297 | Gp0151631 | Ga0134459 |
Sample Name | Human fecal microbial communities from obese patients in Germany - AS68_6 |
Sequencing Status | Permanent Draft |
Sequencing Center | University of Hohenheim |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 95142474 |
Sequencing Scaffolds | 8 |
Novel Protein Genes | 8 |
Associated Families | 8 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Fecal Microbial Communities From Obese Patients In Germany |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | Germany | |||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042936 | Metagenome | 157 | N |
F044554 | Metagenome | 154 | N |
F047126 | Metagenome | 150 | N |
F067845 | Metagenome | 125 | N |
F068811 | Metagenome | 124 | N |
F088920 | Metagenome | 109 | Y |
F090513 | Metagenome | 108 | N |
F101355 | Metagenome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0134459_100128 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 87482 | Open in IMG/M |
Ga0134459_100131 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 83892 | Open in IMG/M |
Ga0134459_100133 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 83692 | Open in IMG/M |
Ga0134459_100364 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 27053 | Open in IMG/M |
Ga0134459_100444 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 19345 | Open in IMG/M |
Ga0134459_101973 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 4204 | Open in IMG/M |
Ga0134459_117331 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 766 | Open in IMG/M |
Ga0134459_118136 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 738 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0134459_100128 | Ga0134459_10012822 | F044554 | VLAGRFIPVLCASIARLFPCRTEIARCFTLDFAISRYLFFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL* |
Ga0134459_100131 | Ga0134459_10013124 | F047126 | VYLKTKKMTNISQTQAGFKSKSLGILCELQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC* |
Ga0134459_100133 | Ga0134459_10013374 | F101355 | MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRDSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA* |
Ga0134459_100364 | Ga0134459_10036422 | F088920 | VKPRKTTTSFFCFPHFFSFVSARPHYYLAFWAGLILHLILHFSQKVAIFASKQAFLLIFVPTLFFSGLSVLSPQTSPKISGQASLYQPWLSPYCLFKDQLEML* |
Ga0134459_100444 | Ga0134459_1004449 | F042936 | MGRGGGKGRVWKTKEGIMKTSEIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG* |
Ga0134459_101973 | Ga0134459_1019734 | F090513 | MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA* |
Ga0134459_117331 | Ga0134459_1173311 | F067845 | MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDNLNHFLFWSGCYGVPEDVTVALLLDDSTAMTARLYAPQADSAAAELLEDAADHSELGAAFIDYNGTAYVVAVFR* |
Ga0134459_118136 | Ga0134459_1181361 | F068811 | MDKMDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRIK* |
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