NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014563

3300014563: Human fecal microbial communities from obese patients in Germany - AS45_24



Overview

Basic Information
IMG/M Taxon OID3300014563 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151590 | Ga0134418
Sample NameHuman fecal microbial communities from obese patients in Germany - AS45_24
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size104934089
Sequencing Scaffolds3
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042737Metagenome / Metatranscriptome157Y
F068811Metagenome124N
F078004Metagenome117N
F081453Metagenome114N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134418_1000939All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.12617Open in IMG/M
Ga0134418_1020312All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales836Open in IMG/M
Ga0134418_1036912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134418_1000939Ga0134418_100093912F042737MQLTAKSNEVFEYLKNNGGKVSIEELANATGRSARSVGANVLDLTNKGLVVREKEEVEGAEKPVAYAILTDAGKTFVPSDDAE*
Ga0134418_1000983Ga0134418_10009836F078004LSSRNTDLLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF*
Ga0134418_1020312Ga0134418_10203121F068811MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI*
Ga0134418_1036912Ga0134418_10369122F081453MSPFFLWIGENIVEKYISANPVCGTNIKAPEPAVKGTPGRKFM*
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