NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300014699

3300014699: Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00164



Overview

Basic Information
IMG/M Taxon OID3300014699 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118444 | Gp0135674 | Ga0121455
Sample NameUrban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00164
Sequencing StatusPermanent Draft
Sequencing CenterWeill Cornell Medical College
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size66125498
Sequencing Scaffolds0
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: New York City
CoordinatesLat. (o)39.0042816Long. (o)-73.93Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081964Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0121455_101406Ga0121455_1014067F081964MSAATASCYRQQIVRAVTGRAPAITWSVTNSGALDRICARLVEAERAAEILQAKGYGKPGLLLHEVAALVPSK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.