NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014780

3300014780: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01D049B1



Overview

Basic Information
IMG/M Taxon OID3300014780 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121299 | Gp0151649 | Ga0134477
Sample NameHuman fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01D049B1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Washington
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size112481876
Sequencing Scaffolds3
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: University of Washington
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057001Metagenome137Y
F078005Metagenome117N
F080673Metagenome115N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134477_1008230All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2192Open in IMG/M
Ga0134477_1009779All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1876Open in IMG/M
Ga0134477_1026095All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium768Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134477_1008230Ga0134477_10082301F057001HQMPIQAPRVRANLMTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKENEIKVDKSIVSALVNLAKDKEVVIQLCKEILPRVNNTFCAYREVKREYYDKNEQDKNKNLKMSEIEDIAILGSYHKRFGYNEPVEYDFGIYYETFNGADKRIIKCAVPIKRYTFSLIAKCVTYYLTHPKNER*
Ga0134477_1008745Ga0134477_10087453F101356LVGIFEVRPLLFDSSTIELFSHVGFGDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0134477_1009779Ga0134477_10097793F080673MNMNEIELLRLQDEALSYLRDNITKDEAYYVLTTDKDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLAASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL*
Ga0134477_1026095Ga0134477_10260952F078005MKKSKFVKELERIIDMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANIMASMGDRTFACLMSEVYKQKFTKAVTISEDEDDEDN*
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