NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014794

3300014794: Human fecal microbial communities from obese patients in Germany - AS50_6



Overview

Basic Information
IMG/M Taxon OID3300014794 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151620 | Ga0134448
Sample NameHuman fecal microbial communities from obese patients in Germany - AS50_6
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size129911592
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F052660Metagenome142N
F062845Metagenome130N
F081354Metagenome114Y
F087335Metagenome110N
F090514Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134448_1001374All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii10848Open in IMG/M
Ga0134448_1002317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium6779Open in IMG/M
Ga0134448_1002323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes6762Open in IMG/M
Ga0134448_1003751All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium4197Open in IMG/M
Ga0134448_1008068All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1970Open in IMG/M
Ga0134448_1021925All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium792Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134448_1001374Ga0134448_10013745F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIF*
Ga0134448_1002317Ga0134448_10023173F026489VVAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0134448_1002323Ga0134448_100232310F062845MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNAAPSKSCA*
Ga0134448_1003751Ga0134448_10037514F087335XXXERKTDMIELYFNDANLLPENREEEQYAEAALNSILAGKTADVEMCIQPCFYNAPLHKGLLYNLDDGTTLRIRPILNEAGEPELLIRCVTEESVETVYQRGANYD*
Ga0134448_1008068Ga0134448_10080682F052660MCILRVLSENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIVLPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNS*
Ga0134448_1021925Ga0134448_10219252F081354LVRENQQSSAHNFVKDFSPIFLKSSRQDPLKKGAVTEILLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLR*
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