NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014799

3300014799: Human fecal microbial communities from obese patients in Germany - AS45_0



Overview

Basic Information
IMG/M Taxon OID3300014799 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151549 | Ga0134377
Sample NameHuman fecal microbial communities from obese patients in Germany - AS45_0
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size148126176
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F029444Metagenome188Y
F067844Metagenome125N
F076190Metagenome118Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134377_1000068All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii112173Open in IMG/M
Ga0134377_1012095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1768Open in IMG/M
Ga0134377_1012322All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1739Open in IMG/M
Ga0134377_1013368All Organisms → cellular organisms → Bacteria1614Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134377_1000068Ga0134377_1000068109F026489LTPKENQKSASDFDALEPRKRXXXXAAPEKTEDSRLFGVKIF*
Ga0134377_1012095Ga0134377_10120953F029444MEVSERLTGFELEDLMSWTVSNLQCPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0134377_1012322Ga0134377_10123221F067844MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGAAVITPQHRS
Ga0134377_1013368Ga0134377_10133681F076190SITMSAKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*
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