NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014802

3300014802: Human fecal microbial communities from obese patients in Germany - AS66_24



Overview

Basic Information
IMG/M Taxon OID3300014802 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151546 | Ga0134374
Sample NameHuman fecal microbial communities from obese patients in Germany - AS66_24
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size144168138
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q48961
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides distasonis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F044554Metagenome154N
F051936Metagenome143N
F062845Metagenome130N
F076189Metagenome118N
F078004Metagenome117N
F088914Metagenome109N
F090514Metagenome108N
F101355Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134374_1000215All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii61079Open in IMG/M
Ga0134374_1003090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5905Open in IMG/M
Ga0134374_1003418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis5388Open in IMG/M
Ga0134374_1013023All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1469Open in IMG/M
Ga0134374_1017800All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q48961068Open in IMG/M
Ga0134374_1019118All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis999Open in IMG/M
Ga0134374_1019974All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides distasonis957Open in IMG/M
Ga0134374_1023368All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales826Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134374_1000215Ga0134374_100021557F062845MKKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDELSNTVPSKSCA*
Ga0134374_1003090Ga0134374_10030901F026489GCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0134374_1003418Ga0134374_10034183F044554VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLYFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHSQGQYRFNSHRYCFSAFLVL*
Ga0134374_1009532Ga0134374_10095321F078004GSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0134374_1013023Ga0134374_10130233F090514MNLRFHALKKDYRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPYSPASNIFLKQTPRRGLPLA*
Ga0134374_1017800Ga0134374_10178002F076189MPGRLCYLPGIVFYFLFPFIKPLLYVEKLQIGTVLPVVPDLYREFAEISACFDLYAIQSAQKPLHMLCNFHENTLGLLIFYTDYAIM*
Ga0134374_1019118Ga0134374_10191182F101355MIEPPFQHGIADLAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0134374_1019974Ga0134374_10199743F051936MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISISKKMLIVRHLSIHIYIKK*
Ga0134374_1023368Ga0134374_10233682F088914LTAAVGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALETDVK*
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