NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014886

3300014886: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm



Overview

Basic Information
IMG/M Taxon OID3300014886 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0127394 | Gp0206535 | Ga0180300
Sample NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size672781150
Sequencing Scaffolds157
Novel Protein Genes180
Associated Families64

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon19
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon4
All Organisms → cellular organisms → Bacteria35
All Organisms → cellular organisms → Archaea18
All Organisms → cellular organisms → Archaea → Euryarchaeota1
Not Available29
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium21
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → unclassified Hadesarchaea → Hadesarchaea archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon6
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon3
All Organisms → cellular organisms → Archaea → TACK group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomeundersea featuredeep marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationMexico: Gulf of California
CoordinatesLat. (o)27.0154Long. (o)-111.3798Alt. (m)N/ADepth (m)2000
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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