Sample 3300016844

Overview

Basic Information
IMG/M Taxon OID	3300016844 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212326 \| Ga0186614
Sample Name	Metatranscriptome of marine eukaryotic communities from Adriatic Sea in f/2 medium with sea water, 20 C, 36 psu salinity and 704 ?mol photons light - Skeletonema marinoi FE60 (MMETSP1040)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	21972543
Sequencing Scaffolds	4
Novel Protein Genes	4
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Adriatic Sea
Coordinates	Lat. (^o)	43.5	Long. (^o)	14.5	Alt. (m)	N/A	Depth (m)	2
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y
F099352	Metatranscriptome	103	Y

Family

Category

Number of Sequences

3D Structure?

F034938

Metagenome / Metatranscriptome

173

F099352

Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186614_107044	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1133	Open in IMG/M
Ga0186614_107481	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1072	Open in IMG/M
Ga0186614_108069	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	993	Open in IMG/M
Ga0186614_111644	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	607	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186614_107044

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema

1133

1072

993

607

Scaffold ID	Protein ID	Family	Sequence
Ga0186614_107044	Ga0186614_1070441	F034938	MNAAFPNAQRMHYEGAASSSTGHRTMTNEAIILPKISADDQVAQRDVEEISNANVTNMVLWRGNLMAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQPGQPKPSFWAVKDKDAPGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186614_107481	Ga0186614_1074811	F034938	MAANEANVNQNIAAQNEQAGQIDVDEDPNMVQWRGNLVTEKEAKALRHVFDNLQDHFGHQRPDPRVRFNHVSLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPQLSIDRVKSYMKAGTGWDVSGEGFIDDNNRSMVAIEVKLCNESGQPEPSFWVVKDKDASGGRGSMSFSRIGSVQEVAAQPHQQRIHRGIGIFSISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLD
Ga0186614_108069	Ga0186614_1080691	F034938	QQSRNTLHLHYALETTCLTTSSQHHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGYHDEEETMVTWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGDVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGETWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKAKLNNQAEQPNPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDNSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVANLVFTLVSVRTWGITDCIAPIVHAPMM
Ga0186614_111644	Ga0186614_1116441	F099352	MVFNGSEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCSVKNNLGELKKLSS

Scaffold ID

Protein ID

Family

Sequence

Ga0186614_107044

Ga0186614_1070441

F034938

MNAAFPNAQRMHYEGAASSSTGHRTMTNEAIILPKISADDQVAQRDVEEISNANVTNMVLWRGNLMAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQPGQPKPSFWAVKDKDAPGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY

Ga0186614_107481

Ga0186614_1074811

F034938

MAANEANVNQNIAAQNEQAGQIDVDEDPNMVQWRGNLVTEKEAKALRHVFDNLQDHFGHQRPDPRVRFNHVSLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPQLSIDRVKSYMKAGTGWDVSGEGFIDDNNRSMVAIEVKLCNESGQPEPSFWVVKDKDASGGRGSMSFSRIGSVQEVAAQPHQQRIHRGIGIFSISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLD

Ga0186614_108069

Ga0186614_1080691

F034938

QQSRNTLHLHYALETTCLTTSSQHHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGYHDEEETMVTWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGDVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGETWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKAKLNNQAEQPNPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDNSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVANLVFTLVSVRTWGITDCIAPIVHAPMM

Ga0186614_111644

Ga0186614_1116441

F099352

MVFNGSEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCSVKNNLGELKKLSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300016844: Metatranscriptome of marine eukaryotic communities from Adriatic Sea in f/2 medium with sea water, 20 C, 36 psu salinity and 704 ?mol photons light - Skeletonema marinoi FE60 (MMETSP1040)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences