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Sample 3300016900
3300016900: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 115 ?mol photons light - unclassified eukaryote RCC 1024 (MMETSP1329)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300016900 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212001 | Ga0186289 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 115 ?mol photons light - unclassified eukaryote RCC 1024 (MMETSP1329) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 19687222 |
| Sequencing Scaffolds | 0 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Pacific Ocean |
| Coordinates | Lat. (o) | -8.33333333 | Long. (o) | -141.25 | Alt. (m) | N/A | Depth (m) | 60 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F096036 | Metagenome / Metatranscriptome | 105 | N |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186289_104233 | Ga0186289_1042331 | F096036 | MARSSFAAAALLLSCARALVPARPSCTRVAPPRAAGLDPTSPEMQAEFEKLKGVDRSEVESELELLGIPTSPDMDDMTVKLRLMEARIIFATPDKAGPAANASPYEKLIAEKPSIKTYVDGLYNKGDTTGANVFMEYVNNPEQAKSRYGSEALYQKIFEKADELVAAPAFTSATLAYAGFPMMGEDALRGQMESIGEVASFSVTEEDPVLGMTGVVTFAEESSAVTAVEKWDGADMGNEVMLTLKYK |
