NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017014

3300017014: Metatranscriptome of marine eukaryotic communities from Arabian Sea in L1 medium, 20 C, 32 psu salinity and 531 ?mol photons light - unclassified eukaryote CCMP 2000 (MMETSP1178)



Overview

Basic Information
IMG/M Taxon OID3300017014 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212305 | Ga0186593
Sample NameMetatranscriptome of marine eukaryotic communities from Arabian Sea in L1 medium, 20 C, 32 psu salinity and 531 ?mol photons light - unclassified eukaryote CCMP 2000 (MMETSP1178)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14302310
Sequencing Scaffolds26
Novel Protein Genes30
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Florenciellales → Florenciella → Florenciella parvula1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica5
All Organisms → cellular organisms → Eukaryota7
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi2
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas reinhardtii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationArabian Sea
CoordinatesLat. (o)14.449Long. (o)64.9997Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009840Metagenome / Metatranscriptome312Y
F010660Metatranscriptome300Y
F012191Metagenome / Metatranscriptome282Y
F015559Metagenome / Metatranscriptome253Y
F024007Metagenome / Metatranscriptome207Y
F024700Metagenome / Metatranscriptome204Y
F027998Metagenome / Metatranscriptome193Y
F036921Metagenome / Metatranscriptome169N
F040437Metagenome / Metatranscriptome161N
F047692Metagenome / Metatranscriptome149N
F052327Metagenome / Metatranscriptome142N
F053739Metagenome / Metatranscriptome140N
F057085Metagenome / Metatranscriptome136N
F060579Metatranscriptome132N
F066367Metatranscriptome126N
F074299Metagenome / Metatranscriptome119N
F074300Metagenome / Metatranscriptome119N
F083576Metagenome / Metatranscriptome112N
F083577Metatranscriptome112N
F085082Metatranscriptome111N
F086477Metagenome / Metatranscriptome110N
F091179Metatranscriptome107N
F093091Metatranscriptome106N
F093100Metagenome / Metatranscriptome106N
F094782Metagenome / Metatranscriptome105N
F096457Metatranscriptome104N
F098439Metatranscriptome103N
F100300Metagenome / Metatranscriptome102N
F102200Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186593_102256All Organisms → cellular organisms → Eukaryota → Haptista1152Open in IMG/M
Ga0186593_102669All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens1088Open in IMG/M
Ga0186593_102984All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Florenciellales → Florenciella → Florenciella parvula1045Open in IMG/M
Ga0186593_103251All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica1013Open in IMG/M
Ga0186593_103443All Organisms → cellular organisms → Eukaryota994Open in IMG/M
Ga0186593_103868All Organisms → cellular organisms → Eukaryota955Open in IMG/M
Ga0186593_103968All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens945Open in IMG/M
Ga0186593_104154All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii929Open in IMG/M
Ga0186593_104246All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica921Open in IMG/M
Ga0186593_104410All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis908Open in IMG/M
Ga0186593_105172All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica847Open in IMG/M
Ga0186593_105288All Organisms → cellular organisms → Eukaryota840Open in IMG/M
Ga0186593_105370All Organisms → cellular organisms → Eukaryota834Open in IMG/M
Ga0186593_105603All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii818Open in IMG/M
Ga0186593_106244All Organisms → cellular organisms → Eukaryota780Open in IMG/M
Ga0186593_106618All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica758Open in IMG/M
Ga0186593_106878All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi743Open in IMG/M
Ga0186593_107238All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi718Open in IMG/M
Ga0186593_107241All Organisms → cellular organisms → Eukaryota → Haptista718Open in IMG/M
Ga0186593_107739All Organisms → cellular organisms → Eukaryota → Haptista685Open in IMG/M
Ga0186593_107968All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas reinhardtii670Open in IMG/M
Ga0186593_108228All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica654Open in IMG/M
Ga0186593_108275All Organisms → cellular organisms → Eukaryota651Open in IMG/M
Ga0186593_108819All Organisms → cellular organisms → Eukaryota → Haptista618Open in IMG/M
Ga0186593_109136All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi599Open in IMG/M
Ga0186593_110155All Organisms → cellular organisms → Eukaryota539Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186593_102256Ga0186593_1022561F027998GFFFYDRTILSEELTNTNAAEIGITTITTANTTLLKNALNEGVILITNLIF
Ga0186593_102669Ga0186593_1026691F098439QPVEMLRSFVLLVAPLVIVAKKGDAPPPAPSGVEEFVNELKGCGSDVLAALMGAASDVAGYLLALPRFATDLFVWCVQFLRDLPGLGNNVFNGDQKTLDQLASFCVTVGSICFVMYISVAAVNMALQTLCSTKEYFKDYLELPAMKTVFGVEVPKPLTQVRNAVQKEVLDRIISWKFSFVMPLSGERGPPSTSAMIGNSAAAISLCMMLACAPAVLALMQNGPNKGDAEALAYTMGTALGIQYLVGKTKA
Ga0186593_102984Ga0186593_1029841F102200MVSANGATIACGAVAAISILAALPMLTGDSGVIPESLKKGTSMDKKGKLKAMDPDLLVHFARTLGHELVVFVTAIAASVANNRCALLAKFLACGMLLSAGWHHAWGNKNEVIGQVVFATAIGYFGFISSGETIPATKWGKHAIACTLLAALMGAVALSLLSGSGLALPTALETLNLGAEQAIGKDVGLSALCTLAGALDNNSPTLCKILPVGLMVAAWSHAMMDDVQGAVLDSCIALGFAILGFGFAAPETGGKKAQ
Ga0186593_103251Ga0186593_1032511F074300KNQASLKAGGWRSKSRWLLFQMGLFSSHILPTLLAGIKYMLTKLTFPLALFGFFTPTPAPIEAGGPVDKPHPHLPRALNQMVGRWKLQEKINVDQFMAGLGINGAKRAALRLAGQEYELLADTSALTIVTSDLRGRSALKLPLGGRGVVAHDGDDGAAVRRAAYVHKDAVVVTETLVGESQPLSICSRTLQSDGRMRIDISKRTPDGRTVAMAAIASRCRPPPSLRLQC
Ga0186593_103443Ga0186593_1034431F093091ARLPTTMARGSNPLERTSVQLMLGVALIALCANSAVDRTDDGLPWEVTLGGFCVFAVIFSAVYAKRTEVALGICSILFVLMPTYHVHNSEVPFKNWLLGSVAPMGAPKGDVLKAVWSNSPNTSKVDEMLGLRSVGLSLMHFSMFNPGIALSINTSEVYHSGLKLDDPLTKERTHDYLLFTSPRKVRRRTESIALLARVPTKFDVWPKDIEDYEFSLQTAANIVAPPTFTGELVKLDKGRAIDAMKNKHNLRPFLLDVYNVEYKYD
Ga0186593_103868Ga0186593_1038681F100300RMPTALLLVLLSLLADADAFVHTRPCIRLSVTRPFHGAARPLSRAVVRLAEEGESLTDAFASFVNQGKKLKPGEGAAARTDVKGLPIGKGGDTRDTSLGAIRAALQNWEVLKDPRNWQAEEFGLVGALGLIAAAIVWGYFTYVSPPEAMPAGPSRAVMVREAKIAECNGDAACEQKAIESTEEAIQLQKDLERCLYSAFSGSEKRMCQMKYGGKSVLGFF
Ga0186593_103968Ga0186593_1039681F036921PSLPRSRSRSGAALDAMGTSAGFFGITCQGPVNGLASLTLSIFNMDHPNDRAWLKKVFDTVVGPDGEMMTSDHVSDFLVCFYRARSEGPTQSGGHVPLYPNNEWQFISELCAAGPISFHTLLDALQEAQANFVEPEAPLEYNSNAVMCNDKVKHTRKVLGPQQQFRKPLTTSQEVGWELGATVPGDLRLLEVGKHPFHLRTSATTQFSDAQEKHTWGRSIGGEFSAYASHKLLEFGGFGIGI
Ga0186593_104154Ga0186593_1041541F015559SRCPLRRFEHGARTFVMSHKWGTSTKVGDAFPNVAVDIGFAGLDPNNRKMSGDLNKGQKTLWVSLPGAFTPT
Ga0186593_104246Ga0186593_1042461F052327TDFCFPIMPEASLEKEFSQVGTMARPAGVPGGLGSSNLGSEYYGKMLKKGTDRGAHALQTASPYAERAEPGWAPKEATVRPSWSDKGAGTVSAGCIDNTYMPAPLKNKWGKQREMSAQEVVVLPHKQATDLLAVTLGTQMPLPKETIEDMPSVREPYSKTIPLFHPIDPMRAEAGFIRGPNIIPGAAPPPISPLHNAPPIQMVPEDWKLRKLEYEKEQKGLGRIPVLKKVSDEATRGAVGPHASFLRKPAGLPGGLSLIPVKP
Ga0186593_104410Ga0186593_1044101F086477MVAEGLGEGLAKPEEVSLKWRRDKLGDGIQLDADCTSVSRRCRNGWGVQLADAWLTKDITTIAIECHELNEDAYIGLVGRNYNPEDWSGKLSESKHGIVLHTATGRITHKGSGTSFVLRKLHPGARLVLTVDMQKRELTFELKASGADDAKAFSNAEAPSESTLVVEDIQAEVALAVCLGPGDQRLRLAGCVRSKPEMTLLGKRVKDFWDEENVVPPLALNVRSDDDPQSQNRKMQENLKAVAGFLE
Ga0186593_104943Ga0186593_1049431F083576GQLQLFAMALARSKLSVWLKVFISITLVASACGFRAAPALRGAAHGRVPAATITMQLWAGKKKSRYEDDGSRLQGADAIGSVDEKLKGGWFSDFKFGTEVEVAVPKDKKKKKAMRGMAADNSDRGLSGNTAYRNTESARFGSYEGQKIRKAKLEAYINSEEEASDGTFGKIISGSALVSIFGSLIAAYLYYGGDGLMAATAKQRALSGMDGGSRQAGAEVCMTTDCMDEPGAL
Ga0186593_105172Ga0186593_1051721F094782FIKSRTSQAAMRLNPPTMSASARLALSLSMATLVTRDNPLVCTPLAETRAKAELAQKQSMVELGFARRLYVPPPRPATRIAAEDANWQEMGLANAVRITEPAAARVISLPLTNERGLSKPKRLTFPPLGDAVQRVLQPGASPGRVFKPAITPQPSSEGRALAKWLRR
Ga0186593_105288Ga0186593_1052881F009840RLGSGSEVARKRMHGTLRTLRILAMLSSAVALAPSRLCLSPSRPRVSRRPILQQALALGLLLPSASSAAEKRPNLKEVVAQLDANTSKEERNAAGDKADHFPKIAFEGGQGQGKKVVFTVPHENLSPPDFSYIEFMWIKDERSGAILTARKFRPSDPDLVITAFGSSGQKLTAASKDNKFGIWQGTFVVP
Ga0186593_105370Ga0186593_1053702F096457QRHARMAKGSSSLPAPVRAIVGVLTLALRAAQLVVATGLIYFIVCQGTMLAKEQKVIKKVPTFVNEGPHCGFVAEQGWSKEYPALGCHKRAFALRDLVKLAPALKWTPTDLAAMAEKRSPYGVSDFLAIFTSRDSLI
Ga0186593_105603Ga0186593_1056032F074299CLERRDVGGGATSAAMDIADMRAVRQASSSLQNDVANLRRRIENSAFQDAEPDAKVWSFQGCSGRRVLVDRRNPEKFDTSNARYTASSWRVGSRSTEINPVTGTHSYDTGNLYRTVHWRDVNNGFGLNGYFTNDLARAGMWKNDGLNTSQTRSKTVANPSNWGTPKHQPTFM
Ga0186593_106244Ga0186593_1062441F047692MHGGEGSQEERFKSHCDWIAGVRAQYQRQMQAAGEDSPDWLRLADTQPLHERFSDAMEFGDFEPPVYRSIGSAVSTVGSVDTDFDEPVYRSVVQLGDRASGSADVEDFEAVSSPVAVTTSTTVEAEWMRSMPPLVKRQRAFKF
Ga0186593_106618Ga0186593_1066181F053739FYDLARTDRWHSMRAPRLLVATFLVAAAEGRVRIPTSERPTVADSIDMRVPWRSNYLRDHQVVGIIRPHGGERRFSKAANGFVGSEPFSRGLVWIVRREFKPLKRIRRKRPFKVRLLHMDPAAILGKLAAEEQIDIDPFEVPSGEYKGKLAVAVSLRKPKPWYRRLL
Ga0186593_106878Ga0186593_1068781F040437ADDQVKEGTAEFYRRRFESSVMGQHAMMPDLALSKHFKSSEEPAPFPSGPNTSFLDPTPMPARFMEASLVEHNLRHVNAKPQNPTYSTSASEVGRLPLQAADFPIRWYGLRGEFTTAFFLGGKGPSSKVNTGLNSAMDRSDFHITFDQGWSGHLGLRDHNIPSLNAASFLGKPARSWRDIGR
Ga0186593_107238Ga0186593_1072381F024700STLRVWPWLCAEGDPFCAMPRAVSSAQKNSMYESMDLMGIISTLESHWVVLDAELSEIRKDFAALRTLTRKYGEFWNRSLTQLKKARTQKENLLKEIKFQMELFNLHIQQGRDLCSKLSVVASHIKTAPAQLQSQLAIEVVSPILANSSNPLSTAR
Ga0186593_107241Ga0186593_1072411F083577MRMPTRLLVLLACLLANADAQSSKSAKSRGKLAGKTPSTTVVGKLRLAMLTWYCAETSGHVDDRPCQNFHFMQKLRKAEDPETRKRLVQERSATMPKDDAGRKKLAMQSREGYLKMYKAYCAQPSPANPAVCTNESLKKVYENMEKSIKQSTNAA
Ga0186593_107739Ga0186593_1077391F024007FLGTPLFMAKPASSAPEKNDGGIVVALVLLIAALCAVFFSAIVLYASATDVVLSKEKKEKVVPARRLARLLAGWANVGNAVVHALLVIMLLTDSARYKVYFPEAEMPIGPIILGVVNGFVGYKTLNGGGIQTALGWNTFVALAGSLMPIVWPKFLDVGMSTWPYLSIFLWLGIYAFESTAFFFSTVAFSLKHVNVKEA
Ga0186593_107968Ga0186593_1079681F093100RYQDDPSRGKSASVRPFNAKPRLKNPEDDAVIAMARDRHKKELQIEKQRHIMSGASGAVLHKILELKQLEADIRAIEEGVKEYQDQVDLMNDRKKDIGKIVKVEQAWCDNFNKLIGPFETKYEESKAEVKGSFDFAKTKYKDSLQTLIDDFGFHPAFKRWFDEF
Ga0186593_108228Ga0186593_1082281F091179TPCWGFSDLRAMLSLVASSLSLNVGGPALTVSRAPAASMVAALETKFVYERPAPIGTTSGEEYPNTALHAPKLEGVFGKVVPTGKLAKSPKFLQQDFLFGTPKRPEVYFAQCTPASMGENRRSWQAYHAPF
Ga0186593_108275Ga0186593_1082752F066367AATDRRPDRPTVRDSTQQRTMATPQGMPPPKTFGDLSEAKAAMRKVLEVLVAHQAELQELITECGDDQQKKMTSLIPKLQKVLAGPMEEAGFPPPPMGIMQGVMAFTQAQTMEGGECIKDGVDMLKAAMMGNFPSDEQLADIKAKLE
Ga0186593_108819Ga0186593_1088191F010660MLHRVLCLLALCSSASALIAGPMAAHATQQRVAASPMMACNGGKGGRGGEGPPKDKMRRGQIKALIQAADSAEKVNAILLSSQTERLLLNMNWKVRSSAQRNLRKRATQFGVDVPLDFGAFNVRPRNTPKAQLKPTVLTESAPHPDAVAALANLRFA
Ga0186593_109136Ga0186593_1091361F057085MGRGGDLEAKVRKVLPKDEQIVLAMIGFYASIYGVVKVAKMAGGKAPEPEKSPLAAAVATATGGSVGKFGFEPPTLDSFDAWSENADNWKKWEEFISGPKLDLWVEGKL
Ga0186593_109217Ga0186593_1092171F060579MLGLLAAACSFNAPMTNVGQSAVVARTDVSMNTKYTVAAGLAKKKNPKTGDSKSLWGYTVGSRAPDTARASGTTKSEQSLLDKLTGKASTPDVKGKVQKTRRI
Ga0186593_110155Ga0186593_1101551F085082DTPLAPKPSHQPHMLKVLVLLLSAGHATALMPTTRLQVQNLKHARATPLQMSDVKGPKDWAFIKGTDASGREYTYMYLDAKKGAAPERNRLAEAIGQEENPFAFILEPYFILLFAPFALVMAIEFDHILKFGRF
Ga0186593_110232Ga0186593_1102321F012191ALPLLLSSRKMAAGVLRSSALAQMASRAASRGMGAGMGGGGHANNPAFMFQADYAKNKWKPALFVGICTAVGCGIPWFSVKFAQRKAGVEW
Ga0186593_110408Ga0186593_1104081F012191LLSSRKMAAGVLRSSALAQMASRAASRGMGAGMGGGGHANNPAFMFQADYAKNKWKPALFVGICTAVGCGIPWFSVKFAQRKAGVEW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.