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Sample 3300017054
3300017054: Metatranscriptome of coastal eukaryotic communities from Adriatic Sea in f/2 medium with sea water, 20 C, 36 psu salinity and 309 ?mol photons light - Skeletonema marinoi FE7 (MMETSP1039)
Overview
Basic Information
IMG/M Taxon OID 3300017054 Open in IMG/M GOLD Reference Gs0128947 | Gp0212415 | Ga0186025 Sample Name Metatranscriptome of coastal eukaryotic communities from Adriatic Sea in f/2 medium with sea water, 20 C, 36 psu salinity and 309 ?mol photons light - Skeletonema marinoi FE7 (MMETSP1039) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 25473307 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 3
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Adriatic Sea Coordinates Lat. (o ) 43.5 Long. (o ) 14.5 Alt. (m) N/A Depth (m) 2 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F034938 Metagenome / Metatranscriptome 173 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186025_108051 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 1193 Open in IMG/M Ga0186025_109264 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 1053 Open in IMG/M Ga0186025_109634 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 1011 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186025_108051 Ga0186025_1080511 F034938 RHARCYLLHPRDITCHIPFPSFTTPTNSNITMMNAAFPNAQRMHYEGAASSSTGHRTMTNEAIILPKISADDQVAQRDVEEKSNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQPGQPKPSFWAVKDKDAPGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY Ga0186025_109264 Ga0186025_1092641 F034938 DIAHNIRNGHCLSIPQPPINNIMMMHYTTNNTTDGSSERLSLYPAYSKTAPQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLKDYGKTWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMLHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY Ga0186025_109634 Ga0186025_1096341 F034938 SLATIPQHTPPALVSQTSSQHHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGDHDEEETMVQWRGNLVSEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGNVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGETWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKAKLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVANLVFTLVSVRTWGITDCIAPIVHAPMM
