Sample 3300017071

Overview

Basic Information
IMG/M Taxon OID	3300017071 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211926 \| Ga0186214
Sample Name	Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 720 ?mol photons light - Emiliania huxleyi PLY M219 (MMETSP1151)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	30136757
Sequencing Scaffolds	4
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009840	Metagenome / Metatranscriptome	312	Y
F013862	Metagenome / Metatranscriptome	267	Y
F034449	Metagenome / Metatranscriptome	174	N
F098706	Metagenome / Metatranscriptome	103	N

Family

Category

Number of Sequences

3D Structure?

F009840

Metagenome / Metatranscriptome

312

F013862

Metagenome / Metatranscriptome

267

F034449

Metagenome / Metatranscriptome

174

F098706

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186214_109449	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1049	Open in IMG/M
Ga0186214_111330	All Organisms → cellular organisms → Eukaryota	932	Open in IMG/M
Ga0186214_115611	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	732	Open in IMG/M
Ga0186214_116952	All Organisms → cellular organisms → Eukaryota	678	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186214_109449

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales

1049

Open in IMG/M

Ga0186214_111330

All Organisms → cellular organisms → Eukaryota

932

Open in IMG/M

Ga0186214_115611

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

732

Open in IMG/M

Ga0186214_116952

All Organisms → cellular organisms → Eukaryota

678

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186214_109449	Ga0186214_1094491	F013862	MASLDFWLMLLPKAMLFTYTQFFMNYIPQLLHASYGYDHGQAASLGGVAQGGSVIGLLVVGNMIYKGLAPGGKVKLVALLLAVCAAVPLALSLGPEVLPRPLVVPLAVLWGLAYALPFYIPPGEFAMQIGGKSATGLFSNLFDAAGFTFSALWNPWASSLAKDGDFRVVLLSQALFGALSLVAMPLCMHRQAARAASAKKVA
Ga0186214_111330	Ga0186214_1113301	F098706	AGKFDNLKDPAHPCKLRTPPAAQTMLATSMLSLSANRAEVSTGNLRGDAGKFDNLKASWEKGLEIGDFKTKVAAKYDYNSNKDFLKEVSFSGDLVEGDSADDVSVSYELRRDFASKRSDVRLTASSQGTTLSAEYDTEDQLTEVAVQREVDLGDQKVDVQPSWMVKAKAARVKLMSGLNNGKDKVSAQFDYDVDGKEVGALEVGFTRQLKAGQTLAASYKPDKSDLEVSLQDDNFEDGATWTATANVPLESADANLLDAARVTLKRSWGW
Ga0186214_115611	Ga0186214_1156111	F034449	LTPMTYMPTLKLAALALLASSTAALKVEKPVVKPVLKLRGGVSAGDVITGGALFLSASVGLPALAGGSDALFMINYPGFDWAGYQAKWTAESKSYLDTMTRFFGGALLLAGALQYYAKDVMAAKPYYAILTVTQLVFAGLQIFFAAPTAAMPSVHYVYAGMNAVLAVAGAMAMI
Ga0186214_116952	Ga0186214_1169521	F009840	ASMRALSWLLLCSFRGTSALQPSRPGVSRRPLLQHALALGVLAPGAAAAAAEKKPSLKEVVAQLDAGTPKEERNAHGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP

Scaffold ID

Protein ID

Family

Sequence

Ga0186214_109449

Ga0186214_1094491

F013862

MASLDFWLMLLPKAMLFTYTQFFMNYIPQLLHASYGYDHGQAASLGGVAQGGSVIGLLVVGNMIYKGLAPGGKVKLVALLLAVCAAVPLALSLGPEVLPRPLVVPLAVLWGLAYALPFYIPPGEFAMQIGGKSATGLFSNLFDAAGFTFSALWNPWASSLAKDGDFRVVLLSQALFGALSLVAMPLCMHRQAARAASAKKVA

Ga0186214_111330

Ga0186214_1113301

F098706

AGKFDNLKDPAHPCKLRTPPAAQTMLATSMLSLSANRAEVSTGNLRGDAGKFDNLKASWEKGLEIGDFKTKVAAKYDYNSNKDFLKEVSFSGDLVEGDSADDVSVSYELRRDFASKRSDVRLTASSQGTTLSAEYDTEDQLTEVAVQREVDLGDQKVDVQPSWMVKAKAARVKLMSGLNNGKDKVSAQFDYDVDGKEVGALEVGFTRQLKAGQTLAASYKPDKSDLEVSLQDDNFEDGATWTATANVPLESADANLLDAARVTLKRSWGW

Ga0186214_115611

Ga0186214_1156111

F034449

LTPMTYMPTLKLAALALLASSTAALKVEKPVVKPVLKLRGGVSAGDVITGGALFLSASVGLPALAGGSDALFMINYPGFDWAGYQAKWTAESKSYLDTMTRFFGGALLLAGALQYYAKDVMAAKPYYAILTVTQLVFAGLQIFFAAPTAAMPSVHYVYAGMNAVLAVAGAMAMI

Ga0186214_116952

Ga0186214_1169521

F009840

ASMRALSWLLLCSFRGTSALQPSRPGVSRRPLLQHALALGVLAPGAAAAAAEKKPSLKEVVAQLDAGTPKEERNAHGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017071: Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 720 ?mol photons light - Emiliania huxleyi PLY M219 (MMETSP1151)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences