NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017091

3300017091: Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 745 ?mol photons light - Emiliania huxleyi PLY M219 (MMETSP1150)



Overview

Basic Information
IMG/M Taxon OID3300017091 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0211922 | Ga0186210
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 745 ?mol photons light - Emiliania huxleyi PLY M219 (MMETSP1150)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33212273
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013862Metagenome / Metatranscriptome267Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186210_104344All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales1633Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186210_104344Ga0186210_1043441F013862MLFTYTQFFMNYIPQLLHASYGYDHGQAASLGGVAQGGSVIGLLVVGNMIYKGLAPGGKVKLVALLLAVCAAVPLALSLGPEVLPRPLVVPLAVLWGLAYALPFYIPPGEFAMQIGGKSATGLFSNLFDAAGFTFSALWNPWASSLAKDGDFRVVLLSQALFGALSLVAMPLCMHRQAARAASAKKVA

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