NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017105

3300017105: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 581 ?mol photons light - Chaetoceros dichaeta CCMP 1751 (MMETSP1447)



Overview

Basic Information
IMG/M Taxon OID3300017105 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212227 | Ga0186515
Sample NameMetatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 581 ?mol photons light - Chaetoceros dichaeta CCMP 1751 (MMETSP1447)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size23790345
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAtlantic Ocean
CoordinatesLat. (o)-49.9Long. (o)11.55Alt. (m)N/ADepth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059360Metagenome / Metatranscriptome134Y
F087993Metatranscriptome109Y
F098600Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186515_104997Not Available1408Open in IMG/M
Ga0186515_109415Not Available973Open in IMG/M
Ga0186515_109455Not Available970Open in IMG/M
Ga0186515_110360Not Available895Open in IMG/M
Ga0186515_111664Not Available787Open in IMG/M
Ga0186515_112662All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta715Open in IMG/M
Ga0186515_113467Not Available659Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186515_104997Ga0186515_1049971F059360MTLFTEVLVPANLVPAAAVIREGQALSEITGRKGSVDCIVSYLLNSKAQL
Ga0186515_109415Ga0186515_1094151F087993MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRALGWWSRVKPAALSFVKRVAVRGVKALAGLAIGGINSL
Ga0186515_109455Ga0186515_1094551F087993MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRALFWSWAKRAALTFVKTVKKVPQAVVNFYGDYKNGKLLRRL
Ga0186515_110360Ga0186515_1103601F087993MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRDLHNWSRIIAGALSFFK
Ga0186515_111664Ga0186515_1116641F087993MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRDLHNWSRIIAGALSFFKXKAEEAARAIANLAIGFVENTVRVFKW
Ga0186515_112662Ga0186515_1126621F098600MFTKSFALAWVAVYFCRVVLITNGIIYAISGTSYYRQSYDGYELREAGNSTLYTFPVLRPVIKDAVIEDQFDGLLILAPFMGAAYICVAFTSLAAAFFFRNIEAAITLLVQAALFSMLGCIVRPHLPEDVYNEGERDNVQNAQMVAVITGWIGAVXXXXGCLTDHSGVVTAEGSDAH
Ga0186515_113467Ga0186515_1134671F087993MNIKCIIVSILGLTQGGLAEESTNVRGLQAVEGISAECDMFVASVLRPSETDAMMYDEQDVIDDICNAVSRDAMLQGFVQVKASGNPCLGELMMGLNDVDFIGAITDPDQCEDAIRAGSDARRRMSIMSGEGTVDRDLGLWSRFIAAALGFVKQKALDAARGLKNLIFKPV
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