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Sample 3300017135
3300017135: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Sterile coastal seawater, 18 C, 34 psu salinity and 657 ?mol photons light - Oxyrrhis marina LB1974 (MMETSP1424)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017135 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211972 | Ga0186260 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Sterile coastal seawater, 18 C, 34 psu salinity and 657 ?mol photons light - Oxyrrhis marina LB1974 (MMETSP1424) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 25555802 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Pacific Ocean |
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F000342 | Metatranscriptome | 1262 | Y |
| F001051 | Metatranscriptome | 792 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186260_108403 | Ga0186260_1084031 | F000342 | MLPGGDLKSATMFTPGKRKRMNLVAILLNVFVPWVVFCVLFALVSFSFHYQHPTWTWVFVVLGYVGVLALAIFTWRTKQRNGDPMWFGFAVLALFVAVTLAALLGDMNFWYNMQPFYDIENLNTYPNVDPSVDRGQQRMDAGRVYFAQDSRVDVSRAMGFKNLDIYCVAPIIKGSSKPDTYDFWAVGTNCCSGTSPDFRCGQYANPRARSGLRLMRDDQRPFFRLAVQQAEAAFKITAAHPLFFYWMQDPVAEMNAYRDEGFKYYLLGIFSFFAVNLFAVTCAVVGFSKVG |
| Ga0186260_111110 | Ga0186260_1111101 | F001051 | MGNALATDTIPVLATMVDVHNPKAQDQFYFANVSSGGASTKVIGRSQTLSVEVGISTVLTISVYECPEPVFTPEHARFLGLLRVPIERLAERYSSGIFQQWFNLDTKTDPRAPAGDATTMCTAFEQAYQDAVLNVYQPKICLSVIGSAFEVQRGGRQTCAIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRLCTPSYRPVSQGAPPVARQVLSRPAQG |
| Ga0186260_112038 | Ga0186260_1120381 | F001051 | MGNALATDTIPVLATMVDVHNPKAQDQFYFANVSSGGASTKVIGRSQTLSVEVGISTVLTISVYECPEPVFTPEHARFLGLLRVPIERLAERYSSGIFQQWFNLDTKTDPRAPAGDATTMCTAFEQAYQDAVLNVYQPKICLSVIGSAFEVQRGGRQTCAIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRLCTPSYRPVSQGAPPVARQVLSRPAS |
