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Sample 3300017180
3300017180: Metatranscriptome of marine eukaryotic communities from unknown location in filtered seawater, at 15 C, 29.4 psu salinity and 625 ?mol photons light - Oxyrrhis marina (MMETSP0468)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017180 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211839 | Ga0186127 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from unknown location in filtered seawater, at 15 C, 29.4 psu salinity and 625 ?mol photons light - Oxyrrhis marina (MMETSP0468) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 34923187 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 2 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | |
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F000023 | Metagenome / Metatranscriptome | 5736 | Y |
| F006064 | Metatranscriptome | 382 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186127_102915 | Ga0186127_1029151 | F000023 | HLNRGASGMRPLDTTSASAGLDTIAEDLDALKYDVGELKDLLSNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKGEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAXXXXGRQRPEWAYRFHEQGSGGDPGELAHHPELPFGLLQRGGGGPLRPGAKRG |
| Ga0186127_119415 | Ga0186127_1194151 | F006064 | GGSWVKMGAKSTGTPIQEETEPRSSGQSLPMLQDWDRLSPQEREVVQGKLESIVNAFAKELIRGKVFMKLGRNGRLFYRLCTLDKQLTAFSMHIKGAIVEYPFANMQHISFGYDLTDFTHVPVSLPSDALAAVIVMDNRRLNLVFSSPMERDEFVTCMLVLKERHNRSQKE |
