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Sample 3300017182
3300017182: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium w/o phosphorous, at 18 C, 32 psu salinity and 353 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1366)
Overview
Basic Information
IMG/M Taxon OID 3300017182 Open in IMG/M GOLD Reference Gs0128947 | Gp0211819 | Ga0186107 Sample Name Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium w/o phosphorous, at 18 C, 32 psu salinity and 353 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1366) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 40118266 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota 1 All Organisms → cellular organisms → Eukaryota → Haptista 2 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F009840 Metagenome / Metatranscriptome 312 Y F024007 Metagenome / Metatranscriptome 207 Y F088199 Metatranscriptome 109 N F096482 Metagenome / Metatranscriptome 104 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186107_122563 Ga0186107_1225631 F009840 LAPWAELIEFSMRARRSYLSWLLLCSFRGTSALHLPSRPGVSRRPLLQHALALGALAPGAATAAAEKKPSLKEVVAQIDAGTPKAERNAQGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP Ga0186107_122764 Ga0186107_1227641 F024007 MAKPVTAPSKNDGGVIAALVLLMAALAALFFSAVMLYASAEVTLSKEQKEKTVRARRLARLLSGWSNVGNAVVHALLVIMLLTDTERYKVFFPDEAEMPIGPVVLGAINGFVGAKTLVGHGIVLAVSWNSFVAVAGCLLPVVWPKFIDVGLSEWPYQSIFLWLGIYAFESTAFFFSAVAFSLKDAGKKAA Ga0186107_124459 Ga0186107_1244591 F096482 HILNMHIVVFLSAQSFQPLLRPASPLPAARLSPPSCMARWTQQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFMLLAVPIAKRLADCAGQTCGL Ga0186107_126588 Ga0186107_1265881 F088199 LAEIHMRCLVLFALVVGAVSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQFGVEVPGNFAAFNVRPRNAKKHLLVPSM
