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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300017234 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212323 | Ga0186611 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2-R medium with seawater, 210 ?M silicate, -2 C, 35 psu salinity and 502 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0906) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 42892055 |
| Sequencing Scaffolds | 27 |
| Novel Protein Genes | 28 |
| Associated Families | 11 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 12 |
| Not Available | 13 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Southern Ocean | |||||||
| Coordinates | Lat. (o) | -48.1 | Long. (o) | -24.25 | Alt. (m) | N/A | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004251 | Metagenome / Metatranscriptome | 446 | Y |
| F010973 | Metatranscriptome | 296 | Y |
| F015298 | Metagenome / Metatranscriptome | 255 | Y |
| F016355 | Metatranscriptome | 247 | Y |
| F023270 | Metagenome / Metatranscriptome | 210 | Y |
| F038969 | Metatranscriptome | 164 | Y |
| F044273 | Metagenome / Metatranscriptome | 154 | N |
| F045520 | Metagenome / Metatranscriptome | 152 | Y |
| F053762 | Metatranscriptome | 140 | N |
| F058660 | Metatranscriptome | 134 | Y |
| F068121 | Metagenome / Metatranscriptome | 125 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0186611_103461 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 2290 | Open in IMG/M |
| Ga0186611_103978 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 2163 | Open in IMG/M |
| Ga0186611_111969 | Not Available | 1148 | Open in IMG/M |
| Ga0186611_112401 | Not Available | 1119 | Open in IMG/M |
| Ga0186611_114283 | Not Available | 998 | Open in IMG/M |
| Ga0186611_114716 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 974 | Open in IMG/M |
| Ga0186611_114917 | Not Available | 962 | Open in IMG/M |
| Ga0186611_115532 | Not Available | 929 | Open in IMG/M |
| Ga0186611_116171 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 895 | Open in IMG/M |
| Ga0186611_116310 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 887 | Open in IMG/M |
| Ga0186611_116618 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 871 | Open in IMG/M |
| Ga0186611_117611 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 823 | Open in IMG/M |
| Ga0186611_118119 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 799 | Open in IMG/M |
| Ga0186611_118157 | Not Available | 797 | Open in IMG/M |
| Ga0186611_118694 | Not Available | 772 | Open in IMG/M |
| Ga0186611_119126 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 754 | Open in IMG/M |
| Ga0186611_119218 | Not Available | 750 | Open in IMG/M |
| Ga0186611_119461 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 740 | Open in IMG/M |
| Ga0186611_120299 | Not Available | 706 | Open in IMG/M |
| Ga0186611_120714 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 689 | Open in IMG/M |
| Ga0186611_121337 | Not Available | 666 | Open in IMG/M |
| Ga0186611_122302 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia | 629 | Open in IMG/M |
| Ga0186611_122427 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 624 | Open in IMG/M |
| Ga0186611_122752 | Not Available | 612 | Open in IMG/M |
| Ga0186611_123364 | Not Available | 592 | Open in IMG/M |
| Ga0186611_124810 | Not Available | 546 | Open in IMG/M |
| Ga0186611_125688 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 519 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0186611_103461 | Ga0186611_1034613 | F045520 | MAFNRIFKHIENLIRNDDEVADNIPCKVDILNIRDCRKNEKACDDIGLELLRCMAQFKVDSTEKIRVSIGIAKYNEYVKEIVDKHGKEKATEIISEPTEQLKDIEAYQVLHRLANNVPLKGGAPRTNDEIRNWTYADQVRLEMGEGEWWDSVKIVGYEFGLEKADALFGLSKENDMIESAQIRLVPGFKARKESTLSSVKKIADSVKEAAPSGKTSADFADAFNDLYPTEDDLKAAL |
| Ga0186611_103978 | Ga0186611_1039783 | F045520 | MAQFKVDSTEKIRVSIGIAKYNEYVKEIVDKHGKEKATEIISEPTEQLKDIEAYQVLHRLANNVPLKGGAPRTNDEIRNWTYADQVRLEMGEGEWWDSVKIVGYEFGLEKADALFGLSKENDMIESAQIRLVPGFKARKESTLSSVKKIADSVKEAAPSGKTSADFADAFNDLYPTEDDLKAAL |
| Ga0186611_106949 | Ga0186611_1069491 | F016355 | MPTENTSLKNTTPAGDSNTTNEMVIGKINTYQRTFLIVAGSLLSLIVLIAVATKKDGQHLESSAYEIAESAAALADYQVDSAN |
| Ga0186611_111969 | Ga0186611_1119691 | F010973 | MAPITSNYETIKETSLKDKSVDPAQISGYMATPNQGKSQSTFLQSVLSNKFIGALVVVVLGTGLMAYNATPVPSSNQFRLGDYAATVDGSKGGGITGSESVDELGGNCGIAFAGCLRPDKEDKK |
| Ga0186611_112401 | Ga0186611_1124012 | F038969 | MSTAAIDAFSNKSAPPVAASTTLNRHNAQQEAQQEPPSHTLSSRTVGGHPSAGLSERPTRRKSALSFSPADIGGAATLLSMKLEGAKAIANPTQVLTDASYVVMDPHKFFPDIQISKLRMQYAQVFGRMMILGTTFLPHHGVHPEELAVQLYLLSVSMKPIIRSVQLYKCITNSAKGNCAEECALEFEELEAALTIQPAATIQPATGIAV |
| Ga0186611_114283 | Ga0186611_1142831 | F010973 | MTSFTSNYETITKTLSKDQSLDLTPISGNMTTPTQGNIQSTFLQSVRSNKFFIALVVVVFGTGLMAFNANQVPSTQQFRLGDYAATVDGSKGGGGITGTENVANDGLCCRGDPRGLY |
| Ga0186611_114716 | Ga0186611_1147161 | F068121 | MLNELPKGKITPSVDDPTIWKDEDGRPWKLNPDEIAVYHQPTNIVTAEIRAFVGKVIPSIRNPNLKFISPNADGRYSEVCANRYTGELVIEQQLIGTFNFATDAPNAMKDAKYPAHGEHERLDVTPHNEYGGKYKHIARDIPIGSLEKGPVILGLLEEEPV |
| Ga0186611_114917 | Ga0186611_1149172 | F010973 | MTPFTSNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVLSNKFAVALVVVFLGTGLMAYNANPVPASSQFHSENYAAMVDGSYSGGGITGTEFIEDNDDEYVIV |
| Ga0186611_115532 | Ga0186611_1155321 | F010973 | MAPITSNYETIKETSLKDKSVDPAQISGYMATPNQGKSQSTFLQSVLSNKFIGALVVVVLGTGLMAYNATPVPSSNQFRLGDYAAIVDGSNGGGITGRESVKDSRGNCFFVGCIGPSF |
| Ga0186611_116171 | Ga0186611_1161711 | F015298 | MNGILDYLITHKDWLLLVCFSVDAINTMITFPLIMWNGPKWLLKSTDPDAKEKIEDDASSSSSSSNKTVVNLSDTERQSFVVLWEVFSICYEGYFGFTISTLICLFRIPETRPIFAYSLFALYLYKAKSCLKFLKTGNPQVKVKLMSILFFYWPCYGGYCLLHLIERYLL |
| Ga0186611_116310 | Ga0186611_1163101 | F038969 | HAQSLSSRSHGSVQPESGLSERPTRRKSALAFSPADICGAATLISMKVDAVRGASSAMGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCTEECALEFEELEAALNIQPATIQPAAIAV |
| Ga0186611_116618 | Ga0186611_1166181 | F038969 | HAQSLSSRSHGSVQPESGLSERPTRRKSALAFSPADICGAATLISMKVDAVRGASSAMGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCIISATGDCAKECALEFEELEAALNMNTPVIQPAIAV |
| Ga0186611_117611 | Ga0186611_1176111 | F053762 | FKYKTKTKNKYTYTMAFNSTQNNDQIPVAVAAPVEPVVQQEVMTYGEPTEFLIKNNWFGGGNAEITSNGEAVFQMIRMGGSVLFKNCELVINNISGEPILSMKEHTYGSGRAMELCRVDPSSPNPAMTAVPICRVVRNNCKLTLHNRYEVQLLGQTAENYSSSVDCNGNWPKSFTFEASGKELATVQKSSPKNWKLNVSAGGDVLLFIGIACAIDRMSHESKQRKAIIFGTAGAIGAIGTAGN |
| Ga0186611_118119 | Ga0186611_1181191 | F053762 | RKVKEIKLIQYILQPYTMAFYSNQTPVAVAAPVEPVVQQIMTYGQSVDFLIKNDWFGGGNAKITAKNSEAVFQMVRMGGSVIFKNCELVINNMSGEPVLFMKEHTYGSGRGMELCRVDPTAPNPAMTAVPICRILRKGCKLTLHNRYEVQLLGETAKNYSSSIECNGKWPKSFSFEASGKELATVHKTIGKKWQLNVSTGEDVLLFIGVTCAIDRMMHEAAQRKAIIGGAAAAIS |
| Ga0186611_118157 | Ga0186611_1181572 | F010973 | MAPITSNYETIKETSLKDKSVDPAQISGYMATPNQGKSQSTFLQSVLSNKFIGALVVVVLGTGLMAYNATPVPSSNQFRLGDYAAIVDGSNGGGITGRESVKDSRG |
| Ga0186611_118694 | Ga0186611_1186941 | F038969 | FSPADIGGAATLLSMKLEGAKAIANPTQVLTDASYVVMDPNKFFPDIQISKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECAEECALEFEELEASLNIHTPTIQPAAIAV |
| Ga0186611_119126 | Ga0186611_1191261 | F004251 | MVNSQELKEETALFLKKDILAVGIFDVSLTGGKRIVAPAAAGLAAGLITKHIQKNVIDKKNEGDKEDDKKEYSMGNKFLTGAIGLATAAGTQQLMKSHDAKKSGLTPIMIVAVTKNTVYLLDWKGTHNKGKGPTEILDEFNLIKATIKNHTRGLVHHTIDIKEDGDHAKIECNLGATHSNKEMNREVIKLLKETN |
| Ga0186611_119218 | Ga0186611_1192181 | F038969 | MSTAAIDAFSNKSAPPVAASTTLNRHNAQQEAQQEPPSHTLSSRTVGGHPSAGLSERPTRRKSALSFSPADIGGAATLLSMKLEGAKAIANPTQVLTDASYVVMDPHKFFPDIQISKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYNCITKSAKGNCAEECALEFQELEAALNIKTTSAVVV |
| Ga0186611_119461 | Ga0186611_1194611 | F044273 | MVNQETLINESSTFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIKNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVAVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATMKFHTRDITAHTIDITEDGDSAKIVCDLGPTHHNKKMNREVINELKKN |
| Ga0186611_120299 | Ga0186611_1202991 | F010973 | MTPFTSNYETIKETSSKDKSLDLALISGDMTTPSQGKIQSTFLQSVLSNKFAVALVVVFLGTGLMAYNANPVPASSQFHSENYAAMVDGSYSGGGITGTEFIEDNDDDPEPGRPPM |
| Ga0186611_120714 | Ga0186611_1207141 | F038969 | HAQSLSSRSHGSVQPESGLSERPTRRKSALAFSPADICGAATLISMKVDAVRGASSAMGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEASLNIHTPTIQPAAIAV |
| Ga0186611_121337 | Ga0186611_1213371 | F038969 | MSTAAIDAFSNKSAPPVAASTTLNRHNAQQEAQQEPPSHTLSSRTVGGHPSAGLSERPTRRKSALSFSPADIGGAATLLSMKLEGVKAIANPTQVLTDASYVVMDPHKFFPDIQISKLRMQYAQVFGRMMILGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYNCITKSAKGKCAEECALEFEELEAALTIQPATTIQPAGVTV |
| Ga0186611_122302 | Ga0186611_1223021 | F023270 | MTVFSSSLMIQPVEGRNAHFTMEFIPTFKNGLPHKCHPDEIKTLETFLGNILTEETGMIEHSVEYLDSMYDANDSSTVAGTGAHHMKRHHFSKVRGFDFTFDCPTQQGGVLSCPDNDWCHVLCLDESVKPGHESLTERANNLKSKLHATSKTVEGPAYNVKCL |
| Ga0186611_122427 | Ga0186611_1224271 | F038969 | LSSRSHGSVGPEQSGSLSERPKRRKSALAFSPADIGGAATLISMKVDAVRGASSAMGGPTQLLTDASYVVMDPNKFFPDIKVSKLRMQYAQVFGRMMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEASLNIHTPTIQPAAIAV |
| Ga0186611_122752 | Ga0186611_1227521 | F058660 | KLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCTEECALEFEELEAALNIHAPAIQPAAIAV |
| Ga0186611_123364 | Ga0186611_1233641 | F010973 | MAPITSNYETIKETSLKDKSVDPAQISGYMATPNQGKSQSTFLQSVLSNKFIGALVVVVLGTGLMAYNANPVPASSQFRLGNYAAIVDGSNGGRITDPESKNLGGNCFCNIILCCWVPSF |
| Ga0186611_124810 | Ga0186611_1248101 | F016355 | IMSTENTSLKNITPTGDSNTSDKMVIGQHSTYQRPFLIAAVSLLTLLVWIAVAGTSGGQHLQLSATKIAEGAVALADYQVDSADLALAKEIFGLDAVSENKGKI |
| Ga0186611_125688 | Ga0186611_1256881 | F058660 | MGGPTQLLTDASYVVMDPNKFFSDIKVSKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEASLNIHTPTIQPAAIAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |