NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017273

3300017273: Metatranscriptome of marine eukaryotic communities from English Channel grown at 18 C, 40 psu salinity and 447 ?mol photons light - Elphidium margaritaceum (MMETSP1385)



Overview

Basic Information
IMG/M Taxon OID3300017273 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212177 | Ga0186465
Sample NameMetatranscriptome of marine eukaryotic communities from English Channel grown at 18 C, 40 psu salinity and 447 ?mol photons light - Elphidium margaritaceum (MMETSP1385)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size40222744
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum1
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera1
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationEnglish Channel
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010522Metatranscriptome302N
F015563Metagenome / Metatranscriptome253Y
F015960Metatranscriptome250N
F054572Metatranscriptome139N
F057102Metatranscriptome136N
F058691Metatranscriptome134Y
F059642Metatranscriptome133N
F070865Metatranscriptome122Y
F075672Metatranscriptome118N
F086594Metatranscriptome110N
F091322Metagenome / Metatranscriptome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186465_113095Not Available1083Open in IMG/M
Ga0186465_114018All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum1017Open in IMG/M
Ga0186465_115435All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera924Open in IMG/M
Ga0186465_115905All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa894Open in IMG/M
Ga0186465_116276All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa871Open in IMG/M
Ga0186465_116490Not Available860Open in IMG/M
Ga0186465_117546Not Available802Open in IMG/M
Ga0186465_118470All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa755Open in IMG/M
Ga0186465_118833Not Available737Open in IMG/M
Ga0186465_118950Not Available732Open in IMG/M
Ga0186465_119197Not Available719Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186465_113095Ga0186465_1130952F070865SHLRCNIMAVPFFSDFTKRTKDYFKRDKYDLGQGIEIAAKCGGDIGLKGKFSSVGGPQVRSKFVATMKRDNGREIEVTEDLNKGLGLKVTLPKLYRNIDLQSEHSNADVEVTAKYQPSAEAKNSFYSAKVAGYFNPSKNGKRVCSTKAEFAVGDDQLNLSVGGDITIVDEAKNDGASQSPDPKIKSYTLGFLYTPSKSTQYSVIYTPDAQSNGMEYEFTCFRRMSEKCALSAKAFGKVDTKLTGYPPVISLAGGWTLGANYLQAFVNSRKEWGLAYKVRVSDTASLNLGVSSFLSADQRSDTKFGYKLSV
Ga0186465_114018Ga0186465_1140181F075672MALPEKTATIDPDREWALGNPDYKAISWYSSADGRFEEKLARESPLDSFSGLNYNKIARGDNEYYGSTTAPLYAYEFDEDAYYREFQPVKSDEQVQTELNEPVEKFEAKLKEFVDKGEELVWTPAMEEMARGCPIAPARAIQYEISPYFQLNTDGYRKHWANTRLVEFRPMLRMQQKWMNTSSDFFFRFQIMRWNLSSKIRMRYWKMVASGVYFGLLIDHFWARQYKRKFKWH
Ga0186465_115435Ga0186465_1154352F015563VNLLPHSFETYYSSEKTLQQPEACQCSCCMSAPKVSRAISARPAFWGKWGIYNPNVAKEYLKQAYNRGYGQPLISGRENGWGTTSLHAYMARRWNYDWLKMIAMRVDAERVPLLVLRRQIWMARVEYWLRRWNTRKAINRAAKVEWAYIKERLHQPMTWTGRDAQHALLWLINVAGLWCIGEVVSRKSLYGYDVATPEWTPSKPKFVPGFYHTYDPFENYPFENQPNYITKQFQRSSWWHNSKEVYWAPHRIPGGYPHG
Ga0186465_115905Ga0186465_1159051F010522KKHLLLLCVAKNPSLSAKHLAEYIIMLSRLSYRTVLCTKSPFISVLSARSFSTLDEKGADRIEDRLAGLMKTDAEIDAELKTHFDDEGSYKPPHMSSFPSMTRRDVMMNVRIPPLGIEPPPFGEDQIREITEKTTLTRENIEWTRKHWLDQEIKPDQKEHAKLAYDMLEMYKKGVSYATINLWIDYYSGADIPGNKDAIYNRSWARIDS
Ga0186465_116276Ga0186465_1162761F054572MVRPEIFLTNTGIPNPLAKLDPRYHPLGQPGPRHRGPVWICKVPWGLRLPAFVLTYCFLAWNGRHFMFPHRARTVHNVELPIFTEREVRGEWWDRFCKHSDPFRFGHIYAKIQEDRIRKAKREGLLPENYPENEEQLNQMDPAVFEAMIPEIKKLKFVPGKDRCDGMVGYRGTMPKYHGIAEE
Ga0186465_116490Ga0186465_1164901F015960MFRLNKPITNLARRGCTLYKARSMTPALVLASTRSAGTKGAPPISIDDLYGLYFLSEPKICPPVERAPQDMFDTDMRLQEVVVYLNGGLHAAKDKITEDFVRHMFESRVVFFPRDASSKPQEFRDILREKGGTEELPQLWIQGKLVASGSELGDKEHVYDLCTPARRPWPREGPYRMGFYNREGVTQSDKIIGLPQ
Ga0186465_117546Ga0186465_1175461F086594MTAKRSVLQFLQKRCFQARPQKIPFPPPVPMKTQFNLSHIEPIKNYELAVSDSGDNFEKHNSLYQHYQVGECYVTHSFVDFERFFGGCYGEYWPSHFGGGYHKFLRRRSDEPAQYNAKYPWRNWIRRKCDERGIHWDFPRGQDYHIIARWLLSIYMIVFVARQYGNYKAHRANAKPLEPEDDYPLRFNLPFYVYIIHEQSAPNFE
Ga0186465_118470Ga0186465_1184702F091322MAAAATSTAFPRIISHNLLTGSAFLSYSRLVAFGFGYLYANAKLAYLSGYVESENEKKFAQIREAEISANTLRGVTFHAPQVWDPEYTELQMRFRDCYPDFYLHPNDEFVYQLTRGKQKDQKVKEELHAEAVAFLKEWKSSEGK
Ga0186465_118833Ga0186465_1188331F057102MPVVSHRTDFCLAHRLKWKIVPPPAVIPPKPERIIRYGAYRLKLKPFPTAGIAFGIPLIGSIILSQAFYYFVAKPHRERFREYYFSNIATDEPDSYFLRAWKAQLPVFPTTKEEYDDLSFRRDWEIFRAPPLVPYDVKGYNKKKGKNMDFEKEIFYQKAIYDLNWIFPHN
Ga0186465_118950Ga0186465_1189501F059642MYALRLGSKRFVAASKVLQPHSARAPAALSLVSRRNNGHVYDKRNYIPEKDDYNVSPTARPWDHFTLRLNQNRHRRWGQYMLWFFTLYLFWGWFKFMVPRQALNKVEKWDYQAKYWRDGYWIREFPEGLVIKEWANGKVSVEPGQSSRDSLPVRILNKIFFVRDCKG
Ga0186465_119197Ga0186465_1191971F058691MIRYSPWDLVDFVTLKHPLIGLGGAVYGYCYFYKWPIQDAEANRTQRWRDNWRAEVHYQEAIDWDTKKSRDDMHKFIEGQKEKYGSLKKAIAAYEKRTGKTAPAFLLNDPVYDHTLKRVGVPIKGDEEPHFLWDGTAYMKQSERPPTFADGKVRVPEHPRFYLQ
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