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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300017298 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212322 | Ga0186610 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2-R medium with seawater, 210 ?M silicate, 5 C, 35 psu salinity and 121 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0909) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 35380287 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 22 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 6 |
| Not Available | 12 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Southern Ocean | |||||||
| Coordinates | Lat. (o) | -48.1 | Long. (o) | -24.25 | Alt. (m) | N/A | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004251 | Metagenome / Metatranscriptome | 446 | Y |
| F010973 | Metatranscriptome | 296 | Y |
| F016355 | Metatranscriptome | 247 | Y |
| F038969 | Metatranscriptome | 164 | Y |
| F044273 | Metagenome / Metatranscriptome | 154 | N |
| F053762 | Metatranscriptome | 140 | N |
| F058660 | Metatranscriptome | 134 | Y |
| F075633 | Metatranscriptome | 118 | N |
| F075635 | Metatranscriptome | 118 | Y |
| F086552 | Metagenome / Metatranscriptome | 110 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0186610_104748 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 1710 | Open in IMG/M |
| Ga0186610_109530 | Not Available | 1176 | Open in IMG/M |
| Ga0186610_110142 | Not Available | 1132 | Open in IMG/M |
| Ga0186610_110378 | Not Available | 1116 | Open in IMG/M |
| Ga0186610_110586 | Not Available | 1103 | Open in IMG/M |
| Ga0186610_111510 | Not Available | 1039 | Open in IMG/M |
| Ga0186610_112271 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 993 | Open in IMG/M |
| Ga0186610_113529 | Not Available | 919 | Open in IMG/M |
| Ga0186610_113732 | Not Available | 908 | Open in IMG/M |
| Ga0186610_115595 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 812 | Open in IMG/M |
| Ga0186610_116201 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 783 | Open in IMG/M |
| Ga0186610_116726 | Not Available | 760 | Open in IMG/M |
| Ga0186610_117323 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 734 | Open in IMG/M |
| Ga0186610_118571 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 | 683 | Open in IMG/M |
| Ga0186610_119286 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 654 | Open in IMG/M |
| Ga0186610_120781 | Not Available | 597 | Open in IMG/M |
| Ga0186610_121009 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii | 589 | Open in IMG/M |
| Ga0186610_121751 | Not Available | 563 | Open in IMG/M |
| Ga0186610_122475 | Not Available | 539 | Open in IMG/M |
| Ga0186610_122714 | Not Available | 531 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0186610_104748 | Ga0186610_1047481 | F075635 | KHEVYRKQTEIKQIKMDPNGQEITRSPSPSPVVSHYPEVSKSKSNEEYVQYDESTRHGHTCCFVCCDTRTACLVVNVMSLAFTGLGLISLAPQAMDRPGFERFGIMIAAFVLGIICNALGLYGALKFRKTFILVATVWFGIEAILSVALFMDPVGFIVSILFLYPHLMFFKELQSGVMSRKNYIHEKECCGAIC |
| Ga0186610_109530 | Ga0186610_1095301 | F010973 | MTPFTSNYETIKETSSKDKSLDLALTSGDMTTPSQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLMAYNANPVPPASQFRLGDYAAIVDGSKGGGLTSENGGNLQGGGDCNTFLMSMTQRTSKSKLRNPKK |
| Ga0186610_110142 | Ga0186610_1101421 | F016355 | MPTENTSLKNATPAGDSNTTNEMVIGKMNTYQQTFLIVAGSLLALLVLIAAADTSGGQHLQLSANEIAEGAVALADYQVDSANLALTKDIFGQGAAENDEGCICSPYVIGCLSRSDYFV |
| Ga0186610_110378 | Ga0186610_1103782 | F010973 | MTPFTSNYETIKETSSKDKSLDLALTSGDMTTPSQGKIQSTFLQSVLSNKFAVAFVVVLLGTGLMAYNANPVPPASQFRLGDYAAIVDGSKGGGLTGSNNGGTYKDGARLGNHPE |
| Ga0186610_110586 | Ga0186610_1105861 | F010973 | MTPFTSNYETIKETSSKDKSLDLAPISGNMTTPSQGKIQSTFLQSVHSNKIIVTLVVVVLAIGLMAYNANPVASSNQLRVGNYAAILDRSKGGGFTGSENGGDSYGGVYVCGCFTRNDLFVCL |
| Ga0186610_111510 | Ga0186610_1115103 | F016355 | MPTENTSLKNAAPTGNSNTTHDVIIGKSNTYQHPLLIVAGSLLALLVWLAVTGKSGRQYFKSSVQEMHEGAVALADYQVDSTNLALTKDIFGLGAVSENDKGKI |
| Ga0186610_112271 | Ga0186610_1122711 | F038969 | MVFVLLPIIVSLMSTAAIDAFSNKSAPPVAASTTLNRHNAQQQQQQQPSHSLSSRAVGGHQSGLSERPTRRKSALAFSPADIGGAATLLSMKLDGAKAIANPTQVLTDASYVVMDPNKFFPDIKISKLRMQYAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCAEECALEFQELEAAFNIKTPAAIV |
| Ga0186610_113529 | Ga0186610_1135291 | F016355 | ENTSLKNTTPAGDSNTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSSDKIAEDAVALADYQVDSANLALTKDIFGEGTVSEKEEGCCNPLYDICCLRSSDYFV |
| Ga0186610_113732 | Ga0186610_1137321 | F010973 | TSNYETIKETSSKDKSLDLALTSGDMTTPSQGKIQSTFLQSVLSNKFAVALVVVFLGTGLMAYNANPVPASSQFHSENYAAMVDGSYSGGGITGTEFIEDNDEYMFVCLTRNNTFV |
| Ga0186610_115595 | Ga0186610_1155951 | F053762 | KTKNKYTYTMAFNSTQNNDQIPVAVAAPVEPVVQQEVMTYGEPTEFLIKNNWFGGGNAEITSNGEAVFQMIRMGGSVLFKNCELVINNISGEPILSMKEHTYGSGRAMELCRVDPSSPNPAMTAVPICRVVRNNCKLTLHNRYEVQLLGQTAENYSSSVDCNGNWPKSFTFEASGKELATVQKSSPKNWKLNVSAGGDVLLFIGIACAIDRMSHESKQRKAIIFGTAGAIGAIGTAGN |
| Ga0186610_116201 | Ga0186610_1162011 | F053762 | QYILQPYTMAFYSNQTPVAVAAPVEPVVQQIMTYGQSVDFLIKNDWFGGGNAKITAKNSEAVFQMVRMGGSVIFKNCELVINNMSGEPVLFMKEHTYGSGRGMELCRVDPTAPNPAMTAVPICRILRKGCKLTLHNRYEVQLLGETAKNYSSSIECNGKWPKSFSFEASGKELATVHKTIGKKWQLNVSTGEDVLLFIGVTCAIDRMMHEAAQRKAIIGGAAAAIS |
| Ga0186610_116726 | Ga0186610_1167262 | F010973 | MAPITSNYETIKETSLKDKSVDPAQISGYMATPNQGKSQSTFLQSVLSNKFIGVLVVVVLGTGLMAYNANPVPSSNQFRLGDYAAIVDGSNGGGITGRESVKDSRGNCFFVGCIGPSF |
| Ga0186610_116756 | Ga0186610_1167561 | F016355 | MSNENTSLKIVTPAGDSNTTHEIVIGKSNTYQRPLLIVAGSLLTLLVWIAVAGTNDGQHLKFSAYEIAEGAVALADYQVDSTNLALTNDIFGLDAVSENDDSKI |
| Ga0186610_117323 | Ga0186610_1173231 | F044273 | MVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIKNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVAVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATMKFHTRDITAHTIDITEDGESAKIVCDLGPTHHNKKMNREVINELKKN |
| Ga0186610_117548 | Ga0186610_1175481 | F016355 | HQTKELIMPTENTSLKNTAPAGDSNTTNEMVIGKINTYQRTFLIVAGSLLALLVLVAVAGTNGDQHLQSSTHKNAEGAVALADYQVDSANLALTKDIFGLGAVSENDEGCHGGSLCKFYSHGDPCYCSF |
| Ga0186610_118571 | Ga0186610_1185711 | F004251 | TKTQKQKYKTKIYQTKPNQTKKTNMVNSQQLKNDTSKFLNKDVLAVGIFDVSLTAGKRNVAPVAAGLAAGLITKHVQKKIINKDDDKEYSMKNRMLTGAIGLVTAAGTQQIMKHHDANKNGLTPIMIVAVTKHKVYLLDWKGTHNMGKGPTETLFEFSLSKATIKNHTRKLVHHTVEINEDGNHVKIECNLGATHSNKKMNREVIDLLKQN |
| Ga0186610_119286 | Ga0186610_1192861 | F086552 | NEAEAWKHDSFVARSSLVTVMYNYFGYTCFGGFFQGWSKLGFLTDDCSPAWNTCVNTGIEEGIVAHHNIRDLQKHSKLVNFIIKTRAIFMSEFAKHKDCFPGIDGEAFFVGTVMHSLDHTCMDNNLDDPMWLDVNHPKFGRMAEVGRIVKVGFVQDVPGLIFEKRFKGSKHPFYESVYRKAAKIDKYMADNMDTCIIK |
| Ga0186610_120781 | Ga0186610_1207811 | F010973 | TSNYETIKETSSKDKSLDLALTSGDMTTPSQGKIQSTFLQSVLSNKFAVALVVVFLGTGLMAYNANPVPASSQFHSENYAAMVDGSYSGGGITGTEFIEDNDDDPEPGRPPM |
| Ga0186610_121009 | Ga0186610_1210091 | F075633 | QAGFLWLSGLCKLALRKWLCKVGIVHPKPYNPAEIVGRLCLEGTMAIHYSSMTKDKKVATFSFSNFPTIDADGNAKICDLFVVYINLETKCMVEAKLDDVTLTADEALILCWFNTIASNHVKLHALANWGINNEAEAWKHDSFVARSSLVTVMYNYFGYTCFGGFFQGWSKLGFLTDDCSPAWNTCVNTGIEEGIV |
| Ga0186610_121751 | Ga0186610_1217511 | F010973 | TSNYETIKETSSKDKSLDLAPISGNMTTPSQGKIQSTFLQSVRNNKFFVTLVAVVLATGIMAYNTNSVPSSNQFRVGNYAAIVDGSKGGGIIGSENGVVTGGGCIDGTIWPTFCGCSCVNCGELFNSFSSFKK |
| Ga0186610_122475 | Ga0186610_1224751 | F058660 | YAQVFGRLMVLGTTFLPHHGVHPEELAVQLFLLSVSMKPIIRSVQLYKCITSAKGECEEECALEFEELEASLNIHTPTIQPAAIAV |
| Ga0186610_122714 | Ga0186610_1227141 | F016355 | MSNENTSLKIVTPAGDSNTTHEIVIGKSNTYQRPLLIVAGSLLTLLVWIAVAGTNDGQHLKFSAYEIAEGAVALADYQVDSTNLALTNDIFGLDAVSENDDTGCSCDAFCLVFSNCCKLSDCF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |