NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017306

3300017306: Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 32 psu salinity and 184 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0986)



Overview

Basic Information
IMG/M Taxon OID3300017306 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212198 | Ga0186486
Sample NameMetatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 32 psu salinity and 184 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0986)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size40073030
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae11
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAtlantic Ocean: Baffin Bay
CoordinatesLat. (o)78.5922Long. (o)-74.4922Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010032Metagenome / Metatranscriptome309N
F019282Metagenome / Metatranscriptome230Y
F020015Metagenome / Metatranscriptome226N
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F036560Metagenome / Metatranscriptome169N
F054914Metagenome / Metatranscriptome139N
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N
F101267Metagenome / Metatranscriptome102N
F101269Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186486_108266All Organisms → cellular organisms → Eukaryota → Cryptophyceae1247Open in IMG/M
Ga0186486_109754All Organisms → cellular organisms → Eukaryota → Cryptophyceae1133Open in IMG/M
Ga0186486_109785All Organisms → cellular organisms → Eukaryota → Cryptophyceae1131Open in IMG/M
Ga0186486_112178All Organisms → cellular organisms → Eukaryota → Cryptophyceae981Open in IMG/M
Ga0186486_113516All Organisms → cellular organisms → Eukaryota → Cryptophyceae913Open in IMG/M
Ga0186486_113554All Organisms → cellular organisms → Eukaryota → Cryptophyceae911Open in IMG/M
Ga0186486_113646All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae906Open in IMG/M
Ga0186486_114061All Organisms → cellular organisms → Eukaryota → Cryptophyceae883Open in IMG/M
Ga0186486_115272All Organisms → cellular organisms → Eukaryota → Cryptophyceae824Open in IMG/M
Ga0186486_116793All Organisms → cellular organisms → Eukaryota → Cryptophyceae758Open in IMG/M
Ga0186486_120842All Organisms → cellular organisms → Eukaryota → Cryptophyceae619Open in IMG/M
Ga0186486_122166All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales581Open in IMG/M
Ga0186486_125167All Organisms → cellular organisms → Eukaryota → Cryptophyceae507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186486_108266Ga0186486_1082661F084315KMANSYGSVALGEAPRQRARTPMIALGLAALAVLVTVAVVSTGSAEKPAELLTQELVLFKMEPPPKPWSPPENLWMYWGGSPNKRFGHSGDNMRHLVKLGRLAGGEYRDPHFLFDYGAQTFRDLSEQCCTAIIVPPMKNSMPIYNAQASVAQRLRNYVANGNHMVFTGGSLLSIEFINRYFYFNIEPIAQSGVFKGSGYGNYSPGPFRKLINDDLPWVYKLAPDTLYQDYTSVQSMDLRSLPSGTTVLYMTPKSSPVFAIKFCQRLSERHGETPIKTVPRDCWRHAARGYPCSCGTITYIGYDWHYDQTAADWDKVLLAAVEFQNDPDMSATNSPNCKAKPVVEVDPHAPLAPPKCQTYE
Ga0186486_109754Ga0186486_1097541F010032RDRIGNQIMLRVLNTVTVCLALGLCALAGWQIQNPATFELVSKSPAAAIQQTTELSFLQTSSFVDQVYLYAGLAVDNKHETGFIAKEIRKHNYQTQIRLFTSLDDATVRAVLWDQGVHCLVWPPFVRYPGISETAKTDLRAYAAAGNNVVFMGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRVEQASIETYAVKTRSLPPGGKSMLDSLGATQAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186486_109785Ga0186486_1097851F020015GACGVRRSPKMGAEYLVAPDPHRSANRPSDSYYAKRAFLVAVVVAAVVCGVLLAAPRPVGEGGDAALAGSYYAVTKPPAFNFNRFIRHAWFYDGRSVAGDQEVFLEKMAKTHHYKLQIHKLRSFRDSEFRAALFSESIHCIVFPPLLKFPGISELAKKDFRGYISSGNNAVFIGSYEWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMHRLEQPDGSVYGVKVNSIPMDGKCMFDTMGACVVFYVKYNLGTIVYIAFDYDTPYGADKWTQILHAGMMM
Ga0186486_112178Ga0186486_1121781F020015STMASTGSPPLALYGAVVTKPDGAGRRLRIVAVACVVALAVVCGVLLAVHTTDQEAGSQSLAGAYYAVAKPPAFNFNRFIKHAWFYNGHAVNPESELLVEKLAKKHHYKLEIHHLRTLKDNEFRAALFSEEVHCMVFAPLEHFPGFSELARTDLRGYVSAGNNVVFVGSYEYLSVMNDVFGFGLMSAYADGPYYRNDRTVRGTPFQWSMSRLEQPDGSVYGVKVDSIPMDGNCMFDTMRVCVAFYVKYNLGTIVYLAFDYDQPNVGHWDQILHAAMMM
Ga0186486_113516Ga0186486_1135161F019282MFAILSYVNTINEWAEPRNAEGVTANTVIDSNDEPPCNNQQRMTIRGY
Ga0186486_113554Ga0186486_1135541F087277GAQMAAGFSPMVGSFQPAASSNSALETRRRIRNAFLLVAATSCVLVACCVVLEGNTAAAPRPVSVSEHWLEDGRASLSMFRVARTPMQKKAIRGDPLPHQVHYYSNVGDRLPVLGDEERETRQTFQELVQLAHTCNVLLRRAIWSVDPTVFNPQYNLQVRLDSIHTALGQLARQTGVYLTNPPVVQVDDSVFDEAAADVSRFRKLVERIPEMHNAQYGWVVQYTLIRTQLRKVSSQLTATVNIAKHHFLEVADSIDSMRLNVEAIHEGR
Ga0186486_113646Ga0186486_1136461F010032RSTKSQEMLDTARGLNTAVLCAALLAVCVAGWHMNSAGQSELFQTSVEAVPQQTTELSFLQTSSFVDQVYLYAGLAVDNKHETGFIAKEIRKHNYQTQIRLFTSLDDATVRAVLWDQGVHCLVWPPFVRYPGISETAKTDLRAYAAAGNNVVFMGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPYQFLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186486_114061Ga0186486_1140611F032673FFIWKMADYGSLPAAVEGAPVHPRRRAALLFAGVAALAAVAVLGCVFLVNQDDGMTTLAALNQQEMNAILSKASSMSTQQLSAEVSRLEMSKSLKSVKAVRMQSLVSQNSAANPEGGIYEDVPATVVGPIPGPPDWNGASAVVARLPNIGFAPSMLTEKGVETRGSFTARKSRAGESFYLRIYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGYKKIYIGKSQMQTQHIPRGIVGEFDIMTCRDMGNGEVQYFRIRYA
Ga0186486_115272Ga0186486_1152721F101267AQRATDWWVCAPAVSRRDYRHIKMGCCSSRAPGSHEWQAQVPGSFKANPIPTVNKKQAIPADFFQKCYMKGYLRTLPKKQRIWCMIHENNFYFMDSAEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFVAEGPDEEKALEWYEASLKASSRRN
Ga0186486_116793Ga0186486_1167931F026478EMAGARHFLPLAALLVLLATTTSAAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINTVSTAETARSAFADGTNYFLKMELECTSLCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCDPAEHRTPEQAALFLDDDEDEAGGKTEL
Ga0186486_120842Ga0186486_1208421F101269LDSVSIPAGHVGGGTLVAKCHSTAKGAPPTAKVNGWGPYFANDSHGYIAYGTGEYDGQGSGHSFGGDIWHPSHGYNNNCDGGRSHWSCDFRQA
Ga0186486_122166Ga0186486_1221661F036560AAVGLFLPQEEAIAMLTEQLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186486_125167Ga0186486_1251671F054914TLGAEETFLKMQYGSAPNVAPVRKTANLALAFALIAAALVCAVGIVSYAKASNSLSPISTLTTKLGSEYMVANALVAHATDMSFDENAPVPEHLADLAKAAEDEMKIDAEVMGTR
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