NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017579

3300017579: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 694 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0398) (SRX549005-SRR1294391)



Overview

Basic Information
IMG/M Taxon OID3300017579 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0212252 | Ga0187695
Sample NameMetatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 694 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0398) (SRX549005-SRR1294391)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1090312
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAtlantic Ocean
CoordinatesLat. (o)41.56Long. (o)-70.583Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006064Metatranscriptome382N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0187695_10662All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0187695_10662Ga0187695_106621F006064AKFRAATGPAPIVPDGSQVRGSQALPMLQDWDKLGAKEKEVVQEKLEGIVNAFARELIRGKVFMKLGRNGRLFYRLCTLDKQLTAFSMHIKGAIVEYPFANMQHISFGYDLTDFTHVPVSLPSDALAAVIVMDNRRMNLVFSSPMERDEFVTCMLVLKERHKRTEKA

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