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Sample 3300017583
3300017583: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 322 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0399) (SRX549007-SRR1294393)
Overview
Basic Information
IMG/M Taxon OID 3300017583 Open in IMG/M GOLD Reference Gs0128947 | Gp0212253 | Ga0187696 Sample Name Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 322 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0399) (SRX549007-SRR1294393) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 2021436 Sequencing Scaffolds 3 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus 1 All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Atlantic Ocean Coordinates Lat. (o ) 41.56 Long. (o ) -70.583 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F000241 Metagenome / Metatranscriptome 1481 Y F006064 Metatranscriptome 382 N F014507 Metagenome / Metatranscriptome 262 Y F014819 Metatranscriptome 259 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0187696_10175 All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus 1155 Open in IMG/M Ga0187696_10726 All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae 748 Open in IMG/M Ga0187696_10871 All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae 695 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0187696_10175 Ga0187696_101751 F014819 GLDPKTDEHLLWLAEHAAHVELPSEWTVFDDDDGQKAFYHPRTKMLTRQHPVMSKYKKYLAKLRKFQERMGSVHKKVKPHIAVIFNEVLNRCNRDQPPVTPEIVERMAMLLNIDVAVDFGLCRRMKTDIDRYAEEQFDLAMQAAQKADMDSFLKEIREEQVAMEVLNKPEEVIMCSEIEAQPARVKCDQCKDFFSLEGFAKTHSRGKRQNHTTVKCEQLTCSIYTNVLATCEVDNVLFSDKAYEEVCNKRPELRRKRKKILGGLACSEYPGRRAEVLCEDCSDLFCWEAFIEMHRRGNRQRHVPLRLDEDGLLYRAGVCLSPEETARMIDRARAAREGGPWLAFQDDQLNTYWYHLTDKVTTTVNPYL Ga0187696_10726 Ga0187696_107261 F006064 ASLAPSVRSHFGSRPLRGILYTFVGYLTACGHAPLCVLAAARNMSLFCCDGALCAHSAKFRAATGPAPIVPDGSQVRGSQALPMLQDWDKLGAKEKEVVQEKLEGIVNAFARELIRGKVFMKLGRNGRLFYRLCTLDKQLTAFSMHIKGAIVEYPFANMQHISFGYDLTDFTHVPVSLPSDALAAVIVMDNRRMNLVFSSPMERDEFVTCMLVLKERHKRTEKA Ga0187696_10871 Ga0187696_108711 F014507 DKMLTVQKNNENRSHKTGRLFPTPNKPDPMPPELAFLFTKISPEQMMYMWNILTLCFISQCLLILSYCAGLAFFPEHYWLCTMLFGVPFAYLAIQHIYVDHDVMHGATFPPYTWQKYLTHPFSDFISLPWEEFVLEHNRHHASTVDLLQQGEFGWDPEEFQYAMLEWTWRNKKYPFPIHFFGLNDTGSLFAIEWYFHFPDEXXXXXXXSGTFTFQMRVLGAR Ga0187696_11420 Ga0187696_114201 F000241 SKVAARVAAGYLERLGPKDTDEPFTAASAQPGAEVEFKKRPFGILRYQPGQGGMGAMAMEIIPTSRYPGDPQGQAFAAGITGGMVVTSINGMPMTGEPFGKIMDLLDDEVADPRFSKSTALALEQQGRAAEPLELPLKVTFGSIPGYVYKGKELTADGQDGFAR
