Basic Information | |
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IMG/M Taxon OID | 3300017658 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127392 | Gp0191744 | Ga0182738 |
Sample Name | Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C BE-Lig MG (version 2) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 880230362 |
Sequencing Scaffolds | 35 |
Novel Protein Genes | 35 |
Associated Families | 31 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales | 1 |
All Organisms → cellular organisms → Bacteria | 7 |
All Organisms → cellular organisms → Eukaryota | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 7 |
Not Available | 3 |
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium | 1 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 3 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → anthropogenic environment → compost |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | USA: Emeryville, California | |||||||
Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000911 | Metagenome / Metatranscriptome | 840 | Y |
F001784 | Metagenome / Metatranscriptome | 635 | Y |
F001868 | Metagenome / Metatranscriptome | 624 | Y |
F005470 | Metagenome / Metatranscriptome | 399 | Y |
F007999 | Metagenome | 341 | Y |
F011188 | Metagenome / Metatranscriptome | 294 | Y |
F011929 | Metagenome / Metatranscriptome | 285 | Y |
F015351 | Metagenome / Metatranscriptome | 255 | N |
F016560 | Metagenome / Metatranscriptome | 246 | Y |
F021587 | Metagenome / Metatranscriptome | 218 | Y |
F022330 | Metagenome / Metatranscriptome | 214 | Y |
F023152 | Metagenome / Metatranscriptome | 211 | Y |
F025080 | Metagenome | 203 | Y |
F028371 | Metagenome / Metatranscriptome | 191 | Y |
F029053 | Metagenome / Metatranscriptome | 189 | Y |
F030705 | Metagenome / Metatranscriptome | 184 | Y |
F032316 | Metagenome / Metatranscriptome | 180 | Y |
F035602 | Metagenome / Metatranscriptome | 171 | Y |
F035663 | Metagenome / Metatranscriptome | 171 | Y |
F035899 | Metagenome / Metatranscriptome | 171 | Y |
F040613 | Metagenome / Metatranscriptome | 161 | Y |
F041209 | Metagenome / Metatranscriptome | 160 | Y |
F042653 | Metagenome | 158 | Y |
F044406 | Metagenome / Metatranscriptome | 154 | Y |
F047414 | Metagenome / Metatranscriptome | 149 | Y |
F047589 | Metagenome / Metatranscriptome | 149 | Y |
F049152 | Metagenome / Metatranscriptome | 147 | Y |
F054879 | Metagenome / Metatranscriptome | 139 | Y |
F057460 | Metagenome / Metatranscriptome | 136 | Y |
F070358 | Metagenome / Metatranscriptome | 123 | Y |
F097539 | Metagenome / Metatranscriptome | 104 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0182738_1001252 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 32348 | Open in IMG/M |
Ga0182738_1002409 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales | 22218 | Open in IMG/M |
Ga0182738_1002853 | All Organisms → cellular organisms → Bacteria | 20219 | Open in IMG/M |
Ga0182738_1006119 | All Organisms → cellular organisms → Eukaryota | 12594 | Open in IMG/M |
Ga0182738_1008173 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida | 10444 | Open in IMG/M |
Ga0182738_1022942 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 4831 | Open in IMG/M |
Ga0182738_1034465 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 3434 | Open in IMG/M |
Ga0182738_1034509 | Not Available | 3430 | Open in IMG/M |
Ga0182738_1035532 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae | 3344 | Open in IMG/M |
Ga0182738_1036705 | Not Available | 3258 | Open in IMG/M |
Ga0182738_1038438 | All Organisms → cellular organisms → Bacteria | 3134 | Open in IMG/M |
Ga0182738_1046225 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2682 | Open in IMG/M |
Ga0182738_1054376 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 2347 | Open in IMG/M |
Ga0182738_1056996 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 2260 | Open in IMG/M |
Ga0182738_1059787 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 2173 | Open in IMG/M |
Ga0182738_1064437 | All Organisms → cellular organisms → Bacteria | 2047 | Open in IMG/M |
Ga0182738_1066997 | All Organisms → cellular organisms → Bacteria | 1984 | Open in IMG/M |
Ga0182738_1072163 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium | 1871 | Open in IMG/M |
Ga0182738_1075812 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 1800 | Open in IMG/M |
Ga0182738_1091401 | Not Available | 1558 | Open in IMG/M |
Ga0182738_1092479 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1545 | Open in IMG/M |
Ga0182738_1103811 | All Organisms → cellular organisms → Bacteria | 1415 | Open in IMG/M |
Ga0182738_1110465 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae | 1350 | Open in IMG/M |
Ga0182738_1138801 | All Organisms → cellular organisms → Bacteria | 1134 | Open in IMG/M |
Ga0182738_1155926 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 1039 | Open in IMG/M |
Ga0182738_1156962 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1034 | Open in IMG/M |
Ga0182738_1165535 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 993 | Open in IMG/M |
Ga0182738_1177897 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 941 | Open in IMG/M |
Ga0182738_1200666 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 859 | Open in IMG/M |
Ga0182738_1274197 | All Organisms → cellular organisms → Bacteria | 679 | Open in IMG/M |
Ga0182738_1296030 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 641 | Open in IMG/M |
Ga0182738_1297044 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 639 | Open in IMG/M |
Ga0182738_1347135 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 570 | Open in IMG/M |
Ga0182738_1378855 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 535 | Open in IMG/M |
Ga0182738_1382009 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | 532 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0182738_1001252 | Ga0182738_100125251 | F047414 | MKKESAAGLTLDTRMSPFFGKDLSPRMHHRDSLMLSPLFSSNNHNGGFFSGFTPRYFSNVPHMQDNNKTFGPDDFLLRPSPTHMEIDVNSRFEKAVENMKMELRNNPNQHHMGDHGMDQQGLNLDIDLIDDSYLHAPLTKSPHLQFVGSQPTSKCSFKKFGEWTLSPNASFLPRKKF |
Ga0182738_1002409 | Ga0182738_100240916 | F097539 | MTQRPWTHLVDQPAARHLVAVRHAPKAADEPAALLTTLIEGLCPNGDFALLTRCEEEGALTLCAFATPRDAEQLASAVGAEETEDYPEWASQRCFTLDEPTAQAITDAIEASGIALGVLQHHAPSGVQYANH |
Ga0182738_1002853 | Ga0182738_10028535 | F035663 | LRLSQTWVQSGRVNTQELTEIHQALAAVHDAVGTLTFPGCDRDDMFELMDRVEAELDAAHPNTQVIGTFLNSIARSLRNQPEAREACLRIEDVMERTGLPSTWQTGL |
Ga0182738_1006119 | Ga0182738_10061191 | F005470 | MSVKLRKEGQVITEFPSEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVKEFLEKFDKGLNKMPKKPLLIFVTYNDWLDNNFDEKTREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGVVTQYQDFFTPEEEVKFIEKEFINKNDFEGVAAEDDEELNKE |
Ga0182738_1008173 | Ga0182738_100817311 | F035602 | MSLSNDIKAWLETYPRLNWRLTFDFLLAPENAKAVEFSDYGVACFVKGFQREFIDRDYHEALNWYETGAMQYDSLCLFRLHEIYIGDTHFKVPYDERQAICHLVYSALLSQFEIFDAKVSFWQKFEAFWKKESSKTAYIQELLLSPSADYFVATGGLFSKLFTFYGTKNNFPDILPELRNLSADILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVDTILDMLTNDILFDNFFQNYITHIKLLRAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLGILQTYEDTFCDGTLVLKWKNTASWVNNFVGFCNEKGIGTSKSTDKAMEAYERDMNEMPRVLFSRFRHILLRKRGQLQGQQPFQEDIDPQLEEEITSLKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQWYQKGVDSDTDSCLKNHLLCNEGWRMKCDKRLQKLKMKKGLQTLIINKNQED |
Ga0182738_1022942 | Ga0182738_10229425 | F005470 | MTSINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE |
Ga0182738_1034465 | Ga0182738_10344654 | F030705 | VTEAGSGLTVEQFLTEAAQLHQTWIRRFDVQHRRRPRPPEVEAERLRLVRRLQLIQRLQSEGTPHAEFSARLETFISAPREARLVDGDNPFLEALLQTWNNAQLPQAATLAAGAQPPQPSATVEFRW |
Ga0182738_1034509 | Ga0182738_10345091 | F049152 | MSDDGDLDAMPGPIRPDGGLLQQAADQIQEMLGVHRQLDKLLYQSATQIGGVEFASIFTPVPPERLSAKPRLDALDHDQTFLRSSPLCTADTERSLGLLEILHGPHAQANVDVFVRFCEREKFFERLADGQSFVFVGSHL |
Ga0182738_1035532 | Ga0182738_10355322 | F044406 | MPPLELMLPLAAAGWAFLVWLCGGGLGLAILVFIVLKVLGH |
Ga0182738_1036705 | Ga0182738_10367053 | F028371 | VGVDESVFISASNDGFNVSGLLDLFTFDGLLLAEFNTVVSDVPLSEGSGVDLDDAALDQSVGSDEFVVGGVVDDHDDLGLSGDLFRSPGEVTSIESEGLEFVVSSSHSVSSDGLFADLGEGGRTTRFVLLLLLVDGHTTTGKSSLVSRVSGDTHYV |
Ga0182738_1038438 | Ga0182738_10384384 | F029053 | MDDETPEMERLSMQMRAVMAAWTADPNNEALKRQYRDLQGRYQRLFGDYKQRQRSNGAVH |
Ga0182738_1046225 | Ga0182738_10462254 | F001784 | MGEVIHASFGTEREWEQTHEKTVDGLLTIGNLFGDDEALMRAKAECVYHILREIVEDIPSVQITTRMPDNLTDEQMTMLTESIRQAALKGIEVAMTHSVQVLMSSIYDLCTSKLKVRPC |
Ga0182738_1054376 | Ga0182738_10543762 | F015351 | MPVQIRKLTSEESAKLFPKRGQMDLTEYVVALGSLQPGDAGEVGLGGLSTRALKRRLGQAAKQLNYSLRWAREQSNSAVRFQVREARVPKPRGTGRRGRPRKNPV |
Ga0182738_1056996 | Ga0182738_10569962 | F040613 | FEFALGPPDAAKLIFERGALLHQLLGLLRVVPEIRVLGEVVQFGETRSCGIDVKDASSAARLTA |
Ga0182738_1059787 | Ga0182738_10597872 | F035899 | MVYPRACPHCGVTEPSPEQLYSTRSAFDGGTPSPWKSEIPGRVLDLRCGACWVLFRWDYFGSRLIQVLSEGKPGETTGTGSS |
Ga0182738_1064437 | Ga0182738_10644372 | F007999 | MRDDITERSHARAHQARRNLVNALRECGELADAVEHFEGRELLEVLDYLDSLRFVMAESGQLLQGVLRGSANYTKSV |
Ga0182738_1066997 | Ga0182738_10669972 | F032316 | MRIPLKLSAIDQEHLQELYDSAGVARDELPYSEKFEEIWQGFQDRTFKNAERDQLYGALLKYVRSSSCSATELPPSTLNEEQLKQLKHLLPRHARGSKLLPYSDEFDAAHKEFMKLAGVELSAQDFWRAAVRAQGAKRLPPRRARVTAPADEDDSDVE |
Ga0182738_1072163 | Ga0182738_10721632 | F007999 | MENIDRRMAARAAQARTNLVNALRECAELADAVEHFEGQDLLDTLDYLDSLRFVMAESGQLLAGVVRGQQS |
Ga0182738_1075812 | Ga0182738_10758121 | F041209 | MSCGLTLAAVSADLCEQIANLRRKLQRIGPARTLFLDETALRLNAAPNHTLALPGQQPLVLATDTSAYAARYDMIAVCSFVETLLPMVFTPAERRGADVRGINGAMLQQFIDNTLAQAVEGLDRYPLTLVLDRAPIHLNTQQLLQSFHDRSSESIKEILLLPPNAAKRMSPLDNALFHDWKERCRKRCPVTNHTIEGVMSDAWNQLPAALIHQHYKHCGLVRGQDPYFDCPDP |
Ga0182738_1091401 | Ga0182738_10914013 | F042653 | MNEWILYIMTWASNLSGYPYPDTLPQVQFQSESWFSHRVCKDHVPCPVFGLYEDGEIVYLREDLTEAAKDHVAVHEFVHYLQRESGRFDLNSCLDSDKREQEAFRVQTRFVAEVQNGFARFGMNHLACGPA |
Ga0182738_1092479 | Ga0182738_10924793 | F023152 | VKLTDRGARVQRIKWVELSCMLCGEWAATLEGGSVLRPRAAGTAKISGQRIVCGRCGGALTPTDQGERVSFV |
Ga0182738_1103811 | Ga0182738_11038112 | F001868 | MPQVVDFNFTPELRLRDGRIIRNLEDAAAFVREHEVRPGVDIRDEVLHRIERAHSQEEALAAAYLFTRWLEELEIVE |
Ga0182738_1110465 | Ga0182738_11104652 | F000911 | MSISMEFFASEGHFATYDPFEGSRSRVGIFQLQCRCCGYEPEDAVVPPRVCPKCHSEAWERFAKPGSILENANRY |
Ga0182738_1138801 | Ga0182738_11388013 | F011929 | VDEIEIIYLRFPVHPNITVIQTGPGIEKIIREGASYWIYGTPDGPLAGKKVEIPSDNVAALQWKTGDETTQA |
Ga0182738_1155926 | Ga0182738_11559261 | F022330 | LHFVVENQDEGSTHTSEDVGEGTLEEGLTTFILVDLGEAVEGTVVHDGLTTRLHHESSSDGIEGIRDQTRSSSDELGNNELEEDRGLAIREQDSLQGIVTTEVAGSVGDDTED |
Ga0182738_1156962 | Ga0182738_11569622 | F011188 | LDTYNIYMDELPAGEEIDGEEMIEVEFRVVPGSDDENDPENNAVIAGLDLVDLINLRDALQQEIDNYALSALEAEANRLAGDMG |
Ga0182738_1165535 | Ga0182738_11655352 | F011188 | MLVARSGVITPGGEHVETYNIYMDELPTGEEYDGDEMVEVEFRVVPASDDDDDPENNAVIAGLDLVDLINMRDALQQEIDNYALTALEAEASMADS |
Ga0182738_1177897 | Ga0182738_11778971 | F016560 | MLASQYAVDRLTRVSDRDEVQVARWTAIKGPVGLRLREIRQDRVQVRSQARLAGDLEELGYHVTQSMVSRYEQGLVDAPLTLERIVGWALCCEALSSDAFKETLLLAGYYLPWQEAELASFDDLLHSYRRLS |
Ga0182738_1200666 | Ga0182738_12006662 | F021587 | MSETTQPLDTQTQDPMLAKIVEALEEIRSEEFDYEILRAASAVTGDNAFETWKPSLNYLPPEKIGDEYHVTVYAKGACESCPVKRMHVDSIEPKVRHLVGSDNVFVHDYFDMYDFGQAYMSPE |
Ga0182738_1274197 | Ga0182738_12741972 | F054879 | SFRSAQVSEMSPADTRVFLFHSPNAAADASGAMDKVNAWLGKDRTNSAYPNLKITDITVTSDGSGGVYTLVVCNLGASKPREDF |
Ga0182738_1296030 | Ga0182738_12960302 | F070358 | YLDHRARIADIEINPLVLRPDGEGACAVDVRVIWR |
Ga0182738_1297044 | Ga0182738_12970441 | F025080 | LSCRLEPDTMISFATDFRALWIALMTMLAGATSVAAQSAPTGCPPPRTIYTFTDSSSIQALPGAPAPFCRFANVNGGQQVDLFLGAFSAASPIVQANIDVLTTLLPLQVGKAVHLVRAGTGDKGWQANVSVEKYESVEVPVGRLNCFVLLWTEPSGQGRWERRWWYCPSLEYAAKYSARFEIVSPGGRTLSSSPTSWELAGIRVP |
Ga0182738_1347135 | Ga0182738_13471351 | F011188 | KTARHIWPVVTEDNIIHAQGGGELDTYNIYMDELPAGEEIDGEEMIEVEFRVVPGSDDENDPENNAVIAGLDLVDLINLRDALQQEIDNYALSALEAEANRLAEDMG |
Ga0182738_1378855 | Ga0182738_13788551 | F047589 | RLCGETGFTASSEHSLGGRLIDWRREHAKVCKEWPRYAEQKGLNLDCNGALLYANEDGPYEPRVRPRYEDEEVDDQPAERILPRFDLMSVPAHELAQTALF |
Ga0182738_1382009 | Ga0182738_13820092 | F057460 | GQPPQIQHTVLVQTPKGKAVSYCPDEISVEGKLTVREKKEDGFIISIFELEAGSVKPVAP |
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