NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017825

3300017825: Saline water viral communities from hypersaline pond near village of Ngallou, Senegal ? P7



Overview

Basic Information
IMG/M Taxon OID3300017825 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129073 | Gp0214343 | Ga0189786
Sample NameSaline water viral communities from hypersaline pond near village of Ngallou, Senegal ? P7
Sequencing StatusPermanent Draft
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size3272754
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria2
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArchevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → pond → hypersaline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
Locationvillage of Ngallou, Senegal
CoordinatesLat. (o)14.0491Long. (o)-16.7624Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041612Metagenome159N
F079661Metagenome115Y
F096726Metagenome104N
F098766Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0189786_10010All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes19183Open in IMG/M
Ga0189786_10277All Organisms → Viruses → Predicted Viral2997Open in IMG/M
Ga0189786_10436All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria2177Open in IMG/M
Ga0189786_10455All Organisms → Viruses → Predicted Viral2077Open in IMG/M
Ga0189786_10867Not Available1151Open in IMG/M
Ga0189786_10878All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1138Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0189786_10010Ga0189786_1001013F079661MNKTTIEIPEDTRDRLREERASHESNYGETIDRLLGNADGGQLWTEQEIRDLARDEAESLARR
Ga0189786_10277Ga0189786_102776F096726MTRDDWIDPTNTEASIREHVERLARGDRLDVDTPTGTEQIERRGPEWRLTHLGTGGGWCWAERMDTRQLVDYLTQWRSREGFDPITVRFVEDGGEQ
Ga0189786_10436Ga0189786_104363F098766MTHPTCAVCGFEADGADHVRVEVERVPPERPPKIYHFHTRCFDRCQDWERD
Ga0189786_10455Ga0189786_104552F096726MTRDEWIDPADTEASIREHVERLARGDRLDVDTPTGTERIERRGPEWRLTHLGTGGGWCWSERMDTRQLVDYLTQWRSREGFDPITVRFVKDGGE
Ga0189786_10867Ga0189786_108673F041612RDLLTADAVTAATVRDGATLEVRAGLRVRDGDGVVARARATDTAPLAVTQAVDPAAHGTVGGAGGVTIETG
Ga0189786_10878Ga0189786_108782F098766MSHPTCAVCGHQADAADHVRVEVERVPPEEPPTIYYFHKRCFDRCQDWEQG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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