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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300017828 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129073 | Gp0214344 | Ga0189787 |
| Sample Name | Saline water viral communities from hypersaline pond near village of Ngallou, Senegal ? P8 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | GATC-Biotech AG, Konstanz, Germany |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 7736569 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum aethiopicum | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Pyrstoviridae → Hatrivirus → Hatrivirus HATV3 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrarchaeobius → Natrarchaeobius chitinivorans | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → pond → hypersaline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | village of Ngallou, Senegal | |||||||
| Coordinates | Lat. (o) | 14.0491 | Long. (o) | -16.7624 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020468 | Metagenome / Metatranscriptome | 224 | Y |
| F062484 | Metagenome | 130 | Y |
| F079661 | Metagenome | 115 | Y |
| F098766 | Metagenome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0189787_10071 | Not Available | 10739 | Open in IMG/M |
| Ga0189787_10536 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum aethiopicum | 3549 | Open in IMG/M |
| Ga0189787_11143 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Pyrstoviridae → Hatrivirus → Hatrivirus HATV3 | 1951 | Open in IMG/M |
| Ga0189787_11514 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria | 1516 | Open in IMG/M |
| Ga0189787_11591 | All Organisms → Viruses → Predicted Viral | 1449 | Open in IMG/M |
| Ga0189787_11664 | All Organisms → Viruses → Predicted Viral | 1395 | Open in IMG/M |
| Ga0189787_12395 | All Organisms → Viruses | 917 | Open in IMG/M |
| Ga0189787_12897 | Not Available | 659 | Open in IMG/M |
| Ga0189787_12919 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrarchaeobius → Natrarchaeobius chitinivorans | 651 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0189787_10071 | Ga0189787_1007117 | F062484 | MYLIGSKSKVQTYIAKVDKHEGFTGDITKTWAEPRKHPSKELYAVQKNMSVEPDSNLEEKEELPSDWQAELK |
| Ga0189787_10536 | Ga0189787_105365 | F098766 | CGGEADGAHHVKVEVERIPPEEPPKTYYFHHTCFENSQSWERGL |
| Ga0189787_11143 | Ga0189787_111433 | F079661 | MSKTTIEIPKDTRDRLREERASHESNYGETIDRLLDSGDGGQLWTEQEIRAIASDEVERAATRR |
| Ga0189787_11514 | Ga0189787_115143 | F098766 | MSHPTCAVCGFETDGDDHVRVKVERVPPEDPPERYYFHKTCFARTQDWQQG |
| Ga0189787_11591 | Ga0189787_115912 | F079661 | MSDTTTIQIPTDLRKRLKDERLPHESNYGDTIERLLDDSTGGQLWTEQEIKDLIDRRISQAQRH |
| Ga0189787_11664 | Ga0189787_116641 | F098766 | MTHPTCAVCGFEADGADHVRVEVERVPPEEPAVTYHFHKRCFDRCQDWEQG |
| Ga0189787_12395 | Ga0189787_123953 | F079661 | MTRTTIELPESTRDRLKEERKPHESNYGDTIERLLNEGSGGQLWTEQEIQDLIQREIEQVSRR |
| Ga0189787_12897 | Ga0189787_128971 | F020468 | MPLVKKQITLADGATSDQVLTGTTYEYVGPGTRLVVAAASDDAGVSMNFNVNNAEFARDAEVSEKVTGEPFGWKGGYVMNDMVTTAAERNRPIITFTNNSGASRTIDVAVFIGG |
| Ga0189787_12919 | Ga0189787_129191 | F098766 | MSHPTCAVCGFEADGADHVRVEVERVPPERPPKIYHFHTRCFDRCQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |