NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300018409

3300018409: Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3



Overview

Basic Information
IMG/M Taxon OID3300018409 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118397 | Gp0213396 | Ga0187912
Sample NameGoat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size381396786
Sequencing Scaffolds31
Novel Protein Genes33
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_1201
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
Not Available17
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium grantii → Clostridium grantii DSM 86051
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium3
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon GW2011_AR11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011633Metagenome288Y
F013656Metagenome269Y
F039198Metagenome164Y
F041521Metagenome159Y
F044232Metagenome154Y
F052303Metagenome142Y
F058575Metagenome / Metatranscriptome134Y
F059514Metagenome133N
F059515Metagenome133Y
F059516Metagenome133Y
F061388Metagenome132N
F061415Metagenome131Y
F063222Metagenome129N
F072921Metagenome / Metatranscriptome120Y
F076682Metagenome117Y
F080708Metagenome114Y
F086383Metagenome / Metatranscriptome110N
F094637Metagenome105N
F100397Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0187912_1009023All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_1201528Open in IMG/M
Ga0187912_1013623All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1372Open in IMG/M
Ga0187912_1026084Not Available1147Open in IMG/M
Ga0187912_1028532Not Available1118Open in IMG/M
Ga0187912_1049644All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium grantii → Clostridium grantii DSM 8605938Open in IMG/M
Ga0187912_1052909All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales919Open in IMG/M
Ga0187912_1054232All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron911Open in IMG/M
Ga0187912_1055205Not Available905Open in IMG/M
Ga0187912_1068055All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium843Open in IMG/M
Ga0187912_1072477All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon GW2011_AR1825Open in IMG/M
Ga0187912_1072730All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron824Open in IMG/M
Ga0187912_1078552Not Available802Open in IMG/M
Ga0187912_1080737All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia794Open in IMG/M
Ga0187912_1099389Not Available739Open in IMG/M
Ga0187912_1107755Not Available719Open in IMG/M
Ga0187912_1117172Not Available698Open in IMG/M
Ga0187912_1122931Not Available687Open in IMG/M
Ga0187912_1123078Not Available686Open in IMG/M
Ga0187912_1125530All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia682Open in IMG/M
Ga0187912_1134632Not Available666Open in IMG/M
Ga0187912_1140416Not Available656Open in IMG/M
Ga0187912_1156629Not Available632Open in IMG/M
Ga0187912_1157438Not Available630Open in IMG/M
Ga0187912_1219392All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae559Open in IMG/M
Ga0187912_1222092All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium556Open in IMG/M
Ga0187912_1230792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales548Open in IMG/M
Ga0187912_1253487Not Available529Open in IMG/M
Ga0187912_1254292Not Available528Open in IMG/M
Ga0187912_1254789Not Available528Open in IMG/M
Ga0187912_1259081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium524Open in IMG/M
Ga0187912_1273089Not Available513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0187912_1009023Ga0187912_10090232F061388MPEGGADMGGRGGSSHRQTAGGTAAIQTFLQNAYGANHANAVLAILQNAPAHIRALWEQYAAQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELVGHLARMRRQNPNLNRQQAARALVSEANSKYSYQDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSREIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKKR
Ga0187912_1013623Ga0187912_10136232F059516MRVDLLMEALPVIGTGYLGIFIVTIVIIAVVSLLNKIGRK
Ga0187912_1026084Ga0187912_10260842F058575MARYYKFFMSGMNDTAIELMEQADQLRRNNRFGDAINLYRAAAAAPDATEELRRRSLASVELMQEINGFVNTDLMNP
Ga0187912_1028532Ga0187912_10285321F076682MKRFISVFLLFLFLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEASHDDLRMIMVADPEVALLAAEYTADSEAFYEKYGLWSFEIVMQYDVSLDGEDNWQHHAEWDTEYYTGGYGDGYPYVALRSEMMEDFEFFWLTYHEGQGSETFMPYQPAIITEKYYYSDGYEEEIYSFDVENHSLYIRCRYYMEWEP
Ga0187912_1049644Ga0187912_10496442F011633MVKEEVWSIVPERAEAFFQSQPDVVREGKGRYRFGSCAITLTEMKPKGMGIWAAKRIRVRMEGEEAHVADIYHRFFLQFLSTGG
Ga0187912_1052909Ga0187912_10529092F058575MTAKELLERAEELRRSCDFGDAINVYRAAASAPDATEDIRRKALASVELIQEINGFVNVDLMNP
Ga0187912_1054232Ga0187912_10542323F041521AAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTVLENCLFAGKFERGANLTDEARLGAFGTLRSVKAIKNCYYLAHDGLAAVHSDSNLKPGSDNVEITPATEDDLRNNTVATQLGKLWEQGENYPVIRR
Ga0187912_1055205Ga0187912_10552051F100397MMKKLIAIIALSLSLILCLTACGSKMPYDLSGTASIELHAYDTDSTEPFAKIVVDGEDVATIVEMFSSLKLKEMKYTEPSINGYDFWFKDADGNEIAKLSLPYGPSPWVVVKGTAYQDVNGGVDLNYLAQLVDVTVSAGPMQPEDGADHNAPVEPLFYKSAPGLSVQHDGQSVRALK
Ga0187912_1068055Ga0187912_10680551F059515TDTYGYEFCCKIVDASYTIIKAEELSADMALWQKIAESDVVNDIYKMYDYVNFLCSWPTYYVNNFTDENGNEVKGYYLYAADAENFVYQDGAQYNYGYQEGYFDSIIAKIESVDPSAFADLVANIRKAEALAQEALAELENGNYTSEYQYVEMFGQEDYVYTLNKGDELAARMNEIYTEFANWLGSWEM
Ga0187912_1072477Ga0187912_10724772F059514MHLVLTPVVFALRLNTAIFACFAGKNRKFRAPKKPTVGFFAQGLRK
Ga0187912_1072730Ga0187912_10727301F041521IRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSPLNANSDNVEITAVTEDDLRNNTIATQLGEYWTQGENYPVIRR
Ga0187912_1078552Ga0187912_10785522F076682MKRLLGALLLLLLLLTFIPATAVSAEENDISKFELPAPKAPNYFVYTDGNASEGHHDDLRMIMVADPEVALLAAEYSKDSEAFYEKYGLWSFEICIQYDVSLDGEDNWQHNEEWDTNWYTDGIGNGYPYESIRSELMDDFEFFWLTYYEGEDGSVFEPYKPAITTYVYHHGDWDENIYSFDVENHSLYIRCRYYMEWEPLVKNDDGEGPGEKQSKFSDWSE
Ga0187912_1080737Ga0187912_10807372F058575MKADELYENAEQLRRECRFGEAINAFRDAMAAPDATQEIISRSQASVELIQEINGFVNTDLMNP
Ga0187912_1099389Ga0187912_10993892F100397MKRILILALSLSLLLCLTACGSKMPYDLSGTASIELHAYDTDSTEPFAKIVVDGDEVATIVEMFSSLKLKELDYTEPSIKGYDFWFKDADGNEIAKLSLPYRLSPWVVFKGTAYQDVNGGVDVDYLAQLVDMAVSAGPMQPEDGAGDNESVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDA
Ga0187912_1103062Ga0187912_11030621F063222KKDAELFGALLYGNARNTLLEMINDAYNFKQYAVKAHGLLVSDGLDAADAKRAIEIFFKAFGFPGYREMDPSKVSTVSDTISENFTAEYEGEVLGGKEYGVGTRTCYSNGKWCSYDECVWIDGVMIGYDFAKEIEFGAFETQKIGFVVEDNFVGNIKCFYGEDEEIDAVSKFTV
Ga0187912_1107612Ga0187912_11076121F058575MGAQELFEAGVQHRKNRRFGEAINAFRAAAASPDATDDIISRSLASVELIQEINGFVNVDLMNP
Ga0187912_1107755Ga0187912_11077552F072921MKNRLSLHTDRKSASEGEYIEIRWSCDACPDSLHLTIDSGYKCDTIAVADSGSTRIMMSRSKGKTVITLKAVISGKKVTESVEIRIRNSKGTTARTASGISKTKIWKEKMLAKWYVFRAQMKYWWLSQKKWQKALWIALLIIWLGMLIASFMNSPEPKVSSGQVQTAYLRRFETSGLCLKMSLWQN
Ga0187912_1117172Ga0187912_11171722F013656MEEKLYKELNEQETETTINVLYKENILSIYTTKIDLQRQLNKILGEPTSESKKGKYIIGSRWDVSLEEKSKITQIMLKANIFEL
Ga0187912_1122931Ga0187912_11229312F058575LRFHYICVMDTNTKNIRLTSEELMNQAEELRRNNRFGDAINVFRAAAAAPDATEEIKRKSLASVELMQEINGFVNADLMNP
Ga0187912_1123078Ga0187912_11230781F076682ALIIGGLCIIMKKYLTIILVFVFALAFGSVTAYAAGEEDLSQFTFPKPKAPNYFVYTDGDASEGQHDDMRMIMVTDPEVALLAAEYDRDSDAFYEKYDIYSFAISMQYDVSLDDEEHWQHNEEWDTNWYTNGHTHGYPYMTIGSEMMEDFEFFWLTYYEGEGSDTFAPYQSAILTDVKKWTDYEEEIYSFDTENHNLYIRCRYYMEWEPYDAEKNEIGEKQSLFSEWS
Ga0187912_1125530Ga0187912_11255302F011633MIKEEIWSISIQRARGFFREQADVTEADANTFSFRSCRISLTELKPKGMGVWAARRIQVRMEGEDADVEEIYHRYFIQFLSTGG
Ga0187912_1134632Ga0187912_11346321F094637MKMSELESRLREHSNITKNTMQAPFDLNEEIKNMEVHTMSKPKITMKRTLALVAVLALCIITVTMTPLANSIKGFFSDIVRFDGAITGTKYENATNDIKVDVLESTSENGSVIIPLDLTFENPTEAPFPYIQEVAVSEYKILDSNNKEIIKTKVSEEGGDKGTVSNGKVLVNLSLNDAKLKSGEQYTI
Ga0187912_1140416Ga0187912_11404161F044232MKKLLSMILSILMIIPLCISGVSAEENDISKFELTAPKAPNYFVYTDGDASEGHHDDLRMIMVADPEVALLAAEYDRDSEAFYKKYGLYSFNLVMQYDVSLDGEDRWQHNEEWDTEYYNDGHVNGYPVQSLRSEL
Ga0187912_1156629Ga0187912_11566291F086383IVQKLVEYLTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNEVIQQFDNVYPVNFVYGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSR
Ga0187912_1157438Ga0187912_11574381F052303MDVVWIILAVLSFIGGQVYLFCLLGKLDAFLERRPGDEPTFPYDDSCRDPEDV
Ga0187912_1219392Ga0187912_12193921F080708MILDGCHEGKHTPRLSEVKCPVCGEWVDVFVRMGGRPGQTGTLATSEKCTCGNVLPEGSYETDYGR
Ga0187912_1222092Ga0187912_12220921F061415MFTINKLFDSEVIDHAAEELKKYLRMMMPESGDITVSYNPKAVSGFRLGLMQDFGL
Ga0187912_1230792Ga0187912_12307921F039198MQITSCEITNTKYIQIYLTGEELEKQETKELIKKYKKEKCSVAIFVTGKENYPEILEKIVTKQVELNKNVC
Ga0187912_1253487Ga0187912_12534871F072921QLYKPMKKQMTLSTDRKSASEGEYLDIRWACDACPDSLLLTIDSGYKCDTIAVADSGSTRLAMGRLKGKTTISLIGVISGKKVTESVEIRIRNRKESRKTKAPLSARMKAFGEKMQAKWYVFRAQCKYWWLSQKKWQKALWIAILAI
Ga0187912_1254292Ga0187912_12542922F059514MHLVLTPVVFALRLNTAIFACFAGKNRKFRASKKPTVGFFAQGLRK
Ga0187912_1254789Ga0187912_12547892F013656MEKTYKEINKGETETTINVMYSEKILSVYTNNAELQRKLFKVLGEPTKEHIKGKSIIGSRWDVPLSEKSKISQMILKANIFEL
Ga0187912_1259081Ga0187912_12590811F061415MYTIYKLRSDRVVDFAAEELKKYLQMMMPANADIPIAYDPAAKEGFRLGL
Ga0187912_1273089Ga0187912_12730891F072921EIRWACDACPDSLFLSIDSGCNQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALLLGLLFSSIGRMPEVKVSSDKIQTAYIFS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.